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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHA402
Library CH
(Link to library)
Clone ID CHA402
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14240-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHA402 (CHA402Q) /CSM/CH/CHA4-A/CHA402Q.Seq.d/
XXXXXXXXXXGAAAATTCNACNAANGGAATTTCNTTTAANGANAAAGNNCNTTTCNTTNT
TTTNCCNANAAAACCNATTATNAANAGNGNNAAAATGAATGAANAAAAANATAAAATTGN
TTTAAGNGGNTTNTTTTTAAAAANAATTNAAAATCNTTATTCNGNAANAATTAAAAGNGG
NANTCCNTTNAAAATTGGAAAAATTAGGGCNAAAGNTTCNTTCNANAG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---NSTXGISFXXKXXFXXXPXKPIXXXXKMNEXKXKIXLXGXFLKXIXNXYSXXIKXGX
PXKIGKIRAKXSFX
Translated Amino Acid sequence (All Frames) 
Frame A:
---kixxxefxlxxkxxsxfxxxnxlxxxxk*mxkxiklx*xxxf*kxxkixixxxlkxx
xxxkleklgxkxxsx


Frame B:
---kfxxxnfx*xxxxfxxfxxktxyxxxxne*xkx*nxfkxxxfkxnxkslfxxn*kxx
sxxnwkn*gxxfxxx


Frame C:
---NSTXGISFXXKXXFXXXPXKPIXXXXKMNEXKXKIXLXGXFLKXIXNXYSXXIKXGX
PXKIGKIRAKXSFX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA402 (CHA402Q) /CSM/CH/CHA4-A/CHA402Q.Seq.d/                        115   3e-25
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG134758|BG134758.1 EST467650 tomato crown gall Lycopersicon esculentum cDNA clone cTOE17F22 5' sequence, mRNA sequence.    40   12     1
dna update 2002.10.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_46(AC117070|pid:none) Dictyostelium discoideum chromoso...    65   5e-10
protein update 2008.12.31
PSORT 

 psg: 0.79  gvh: 0.41  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHA402 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHA402Z
3' end seq. 
>CHA402Z.Seq
NNNNNNNNNNGAAAATTCNACNAANGGAATTTCNTTTAANGANAAAGNNCNTTTCNTTNT
TTTNCCNANAAAACCNATTATNAANAGNGNNAAAATGAATGAANAAAAANATAAAATTGN
TTTAAGNGGNTTNTTTTTAAAAANAATTNAAAATCNTTATTCNGNAANAATTAAAAGNGG
NANTCCNTTNAAAATTGGAAAAATTAGGGCNAAAGNTTCNTTCNANAG
Length of 3' end seq. 228
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -