>CHA389 (CHA389Q) /CSM/CH/CHA3-D/CHA389Q.Seq.d/
XXXXXXXXXXGATTTCCCAGATGTTCGTTTAAATATCATTTCAAAATTAGATCAAGTAAG
TAAAGTAATTGGTATTGAAATGTTATCACAATCTCTATTACCAGCTATCGTTGAATTGGC
TGAAGATCATCAATGGAGAGTAAGATTAGCAATTATTGATTATATTCCACTTTTAGCTTC
ACAATTAGGTGTTGAATTCTTTGATGAAAAACTTGGTAATTTATGTATGACTTGGTTAGG
TGATCCAGTATTTTCAATTCGTGAAGCAGCAACTAATAATTTGAAGAAATTAACCGAAGT
ATTTGGAGTTGATTGGGCAAAGAATAATATTATTCCAAAAGTTTTATCTTTACACTNTCA
TCCAAACTATCTCTATCGTATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTGT
TGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATAA
AGTTCCAAATATTAGATTTAATGNAGCTAAAACTTTCCAAACCATTATTCCATTACTCGA
TAGCACAATTGNACAATCAAGAGTCAAACCATTACTCGTAAAACTTCATG

---FPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLASQ
LGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHXHP
NYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNXAKTFQTIIPLLDS
TIXQSRVKPLLVKLH

Frame A:
---isqmfv*isfqn*ik*vk*lvlkcyhnlyyqlslnwlkiinge*d*qlliifhf*lh
n*vlnslmknlviyv*lg*viqyfqfvkqqlii*rn*pkyleligqriilfqkfylytxi
qtisiv*phyfqfqpfqlllevmlslvqwflywpkwfpikfqildlmxlklskplfhysi
aqlxnqesnhys*nfm


Frame B:
---fprcsfkyhfkirssk*snwy*nvitisitsyr*ig*rssmeskisny*lystfsft
irc*il**ktw*fmydlvr*ssifns*ssn**feeinrsiws*lgke*yysksfiftlss
klslsydhiifnfnpfnccwr*cyl*fngsfigqngfr*ssky*i*xs*nfpnhysitr*
hnxtiksqtitrkts


Frame C:
---FPDVRLNIISKLDQVSKVIGIEMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLASQ
LGVEFFDEKLGNLCMTWLGDPVFSIREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHXHP
NYLYRMTTLFSISTLSTVVGGDVISSSMVPLLAKMVSDKVPNIRFNXAKTFQTIIPLLDS
TIXQSRVKPLLVKLH

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI677 (VFI677Q) /CSM/VF/VFI6-D/VFI677Q.Seq.d/                       1132   0.0
SFJ265 (SFJ265Q) /CSM/SF/SFJ2-C/SFJ265Q.Seq.d/                       1132   0.0
SFF891 (SFF891Q) /CSM/SF/SFF8-D/SFF891Q.Seq.d/                       1132   0.0
SFF850 (SFF850Q) /CSM/SF/SFF8-C/SFF850Q.Seq.d/                       1132   0.0
CHD539 (CHD539Q) /CSM/CH/CHD5-B/CHD539Q.Seq.d/                       1132   0.0
CHA389 (CHA389Q) /CSM/CH/CHA3-D/CHA389Q.Seq.d/                       1132   0.0
AFN841 (AFN841Q) /CSM/AF/AFN8-B/AFN841Q.Seq.d/                       1132   0.0
AFM744 (AFM744Q) /CSM/AF/AFM7-B/AFM744Q.Seq.d/                       1132   0.0
AFL883 (AFL883Q) /CSM/AF/AFL8-D/AFL883Q.Seq.d/                       1132   0.0
AFL515 (AFL515Q) /CSM/AF/AFL5-A/AFL515Q.Seq.d/                       1132   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U61987|U61987.1 Dictyostelium discoideum phosphoprotein phosphatase A (pppA) mRNA, complete cds.  1116   0.0    1
AL428358|AL428358.1 clone BA0AB025C09 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    46   1e-09  3
BU276111|BU276111.1 Cr_Emb_06C12_TEXF1 Convoluta roscoffensis embryos from Eva Jiminez Convoluta roscoffensis cDNA clone Cr_Emb_06C12 5' similar to Q23922 PHOSPHOPROTEIN PHOSPHATASE A. Dictyostelium discoideum, mRNA sequence.    58   5e-09  4
BI516804|BI516804.1 BB160023B10E05.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160023B10E05 5', mRNA sequence.    44   1e-07  3
AJ131045|AJ131045.1 Cicer arietinum mRNA for protein phosphatase.    54   0.002  1
BG803517|BG803517.1 0232-50 Mouse E14.5 retina lambda ZAP II Library Mus musculus cDNA, mRNA sequence.    38   0.013  2
CD561948|CD561948.1 B0440C09-5 NIA Mouse E6.5 Whole Embryo cDNA Library (Long) Mus musculus cDNA clone NIA:B0440C09 IMAGE:30442496 5', mRNA sequence.    38   0.014  2
CF982242|CF982242.1 maj79h07.y1 McCarrey Eddy 18 day preleptotene spermatocytes Mus musculus cDNA 5' similar to SW:2AAB_HUMAN P30154 PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT, BETA ISOFORM ;, mRNA sequence.    38   0.014  2
CF896994|CF896994.1 A0218E07-5 NIA Mouse Embryonic Germ Cell cDNA Library (Long, subtracted) Mus musculus cDNA clone NIA:A0218E07 IMAGE:30730134 5', mRNA sequence.    38   0.015  2
CF732380|CF732380.1 UI-M-GZ0-cjr-p-03-0-UI.r1 NIH_BMAP_GZ0 Mus musculus cDNA clone IMAGE:30603914 5', mRNA sequence.    38   0.015  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...   368   e-101
AM920433_216(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   259   5e-68
AM270402_10(AM270402|pid:none) Aspergillus niger contig An18c010...   255   5e-67
(Q9UT08) RecName: Full=Protein phosphatase PP2A regulatory subun...   251   8e-66
AJ131045_1(AJ131045|pid:none) Cicer arietinum mRNA for protein p...   250   2e-65
AF196287_1(AF196287|pid:none) Medicago sativa subsp. x varia Ser...   247   1e-64
EU965946_1(EU965946|pid:none) Zea mays clone 290216 serine/threo...   246   2e-64
AJ243828_1(AJ243828|pid:none) Oryza sativa mRNA for protein phos...   246   3e-64
BC043624_1(BC043624|pid:none) Xenopus laevis phosphorylase phosp...   246   4e-64
BC075576_1(BC075576|pid:none) Xenopus tropicalis platelet-derive...   246   4e-64

 psg: 0.65  gvh: 0.45  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for CHA389 is cyt

>CHA389Z.Seq
NNNNNNNNNNGATTTCCCAGATGTTCGTTTAAATATCATTTCAAAATTAGATCAAGTAAG
TAAAGTAATTGGTATTGAAATGTTATCACAATCTCTATTACCAGCTATCGTTGAATTGGC
TGAAGATCATCAATGGAGAGTAAGATTAGCAATTATTGATTATATTCCACTTTTAGCTTC
ACAATTAGGTGTTGAATTCTTTGATGAAAAACTTGGTAATTTATGTATGACTTGGTTAGG
TGATCCAGTATTTTCAATTCGTGAAGCAGCAACTAATAATTTGAAGAAATTAACCGAAGT
ATTTGGAGTTGATTGGGCAAAGAATAATATTATTCCAAAAGTTTTATCTTTACACTNTCA
TCCAAACTATCTCTATCGTATGACCACATTATTTTCAATTTCAACCCTTTCAACTGTTGT
TGGAGGTGATGTTATCTCTAGTTCAATGGTTCCTTTATTGGCCAAAATGGTTTCCGATAA
AGTTCCAAATATTAGATTTAATGNAGCTAAAACTTTCCAAACCATTATTCCATTACTCGA
TAGCACAATTGNACAATCAAGAGTCAAACCATTACTCGTAAAACTTCATG