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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHA378
Library CH
(Link to library)
Clone ID CHA378
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12914-1|Contig-U15635-1
Original site URL
Representative seq. ID CHA378P
(Link to Original site)
Representative DNA sequence 
>CHA378 (CHA378Q) /CSM/CH/CHA3-D/CHA378Q.Seq.d/
AATTGAAATAATATAATAAATAAAAAAATGATGAAAGCCAATAAAATTATAAAATTATTT
AAAGGTACAGTTATACATTCAATAGAGATTGGTAAAGTTGAAATTTTACCAAATTCATTA
ATTGGTATTGATGAAGATGGTGTAATTCAACATATGAAATCAAATTATGAAGATTTGAAA
CAATTAGAAAAGGATGTAACAATGATTTGTACAGATAATGGTATTAATGAGCAAGAATCA
GTGATTGATATGGGTAATAAATTTTTAATTCCAGGTTTTATTGATACACATGCTCATGCA
CCACAATATCATAATGCAGGCACAGGTACAGATTTACCATTATTAAAATGGTTAGAGAAA
TACACATTCCCAGTAGAGAGTAAATTCAAGGATTTAATATTTGCGGAGAATGTTTATGGT
AAAGTTGTAGACCGTATGTTACGTCATGGTACCACTACCTGTTGTTATTATGCAACCATT
CATTTGGAGGCAAGTGAACTATTGGCAGAGATTGTATCAAAACGTGGTCAACGTGCATTC
ATTGGTAAAGTTTGTATGGATCGTCATTCACCXXXXXXXXXXCGATGTTTTTTTTGAAAA
CTCCAAAAAACTATTTCAAGGAATTGATAAAGCAGAAAAGTCTCAATTTCTTACCAAGTT
CTCATCTTTGTTTGGGGTAATATCAGGATTTTTAGGAATTGGTAGTGTAACTGCGATTGG
AGCTACTGAAGCTGTTGGTGTCACGTCTNTGATCGCTGTAGGAGCCACTTCACTATCAGT
TGTTGCGCCTATTTGTGCTCCAGTACTTTTAACATTTGGTTGCCTTGTTGGTGCTTTTAT
TTCATTTTACAAGCAATCAGTAGCAAGAGATAAAAAATTGAAAACTTTAAAATCTCTTCT
TTCCTATTATATGGAAAATATAGAACTAATCTCCCAAGTAACTGATGAAACAACAAAATT
AATATATCATGAATTAAAAGAGAAGGTTCTTGAATTCAAAAAGTTGGAAGCAAATTTAAA
AATTGATTTTGATTTATCTCCTATCAAAGATCAATTTAAATCAATTACTTCAAAACAAAA
TTTAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
n*NNIINKKMMKANKIIKLFKGTVIHSIEIGKVEILPNSLIGIDEDGVIQHMKSNYEDLK
QLEKDVTMICTDNGINEQESVIDMGNKFLIPGFIDTHAHAPQYHNAGTGTDLPLLKWLEK
YTFPVESKFKDLIFAENVYGKVVDRMLRHGTTTCCYYATIHLEASELLAEIVSKRGQRAF
IGKVCMDRHS---

---DVFFENSKKLFQGIDKAEKSQFLTKFSSLFGVISGFLGIGSVTAIGATEAVGVTSXI
AVGATSLSVVAPICAPVLLTFGCLVGAFISFYKQSVARDKKLKTLKSLLSYYMENIELIS
QVTDETTKLIYHELKEKVLEFKKLEANLKIDFDLSPIKDQFKSITSKQNL
Translated Amino Acid sequence (All Frames) 
Frame A:
n*NNIINKKMMKANKIIKLFKGTVIHSIEIGKVEILPNSLIGIDEDGVIQHMKSNYEDLK
QLEKDVTMICTDNGINEQESVIDMGNKFLIPGFIDTHAHAPQYHNAGTGTDLPLLKWLEK
YTFPVESKFKDLIFAENVYGKVVDRMLRHGTTTCCYYATIHLEASELLAEIVSKRGQRAF
IGKVCMDRHS---

---rcff*klqktisrn**srkvsisyqvlifvwgnirifrnw*cncdwsy*scwchvxd
rcrshftisccaylcsstfniwlpcwcfyfilqaisskr*kienfkissfllygkyrtnl
psn**nnkinis*ikregs*iqkvgskfkn*f*fisyqrsi*inyfktkfn

Frame B:
ieii**ikk**kpikl*nylkvqlyiq*rlvklkfyqih*lvlmkmv*fni*nqimki*n
n*krm*q*fvqimvlmsknq*liwvinf*fqvllihmlmhhniimqaqvqiyhy*ng*rn
thsq*rvnsri*ylrrmfmvkl*tvcyvmvplpvvimqpfiwrqvnywqrlyqnvvnvhs
lvkfvwivih---

---DVFFENSKKLFQGIDKAEKSQFLTKFSSLFGVISGFLGIGSVTAIGATEAVGVTSXI
AVGATSLSVVAPICAPVLLTFGCLVGAFISFYKQSVARDKKLKTLKSLLSYYMENIELIS
QVTDETTKLIYHELKEKVLEFKKLEANLKIDFDLSPIKDQFKSITSKQNL

Frame C:
lk*ynk*kndesq*nykii*rysytfnrdw*s*nftkfinwy**rwcnstyeikl*rfet
irkgcnndlyr*wy**arisd*yg**ifnsrfy*ytcscttis*crhryrftiikmvrei
hipsre*iqgfnicgeclw*scrpyvtswyhyllllcnhsfggk*tigrdciktwstcih
w*slygssft---

---mfflktpknyfkelikqkslnflpsshlclg*yqdf*elvv*lrlellkllvsrl*s
l*eplhyqllrlfvlqyf*hlvallvllfhftsnq*qeikn*kl*nlffpiiwki*n*sp
k*lmkqqn*yimn*krrflnskswkqi*kliliyllskinlnqllqnki*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO805 (VFO805Q) /CSM/VF/VFO8-A/VFO805Q.Seq.d/                       1009   0.0
VFO775 (VFO775Q) /CSM/VF/VFO7-D/VFO775Q.Seq.d/                       1009   0.0
VFI612 (VFI612Q) /CSM/VF/VFI6-A/VFI612Q.Seq.d/                       1009   0.0
VFG718 (VFG718Q) /CSM/VF/VFG7-A/VFG718Q.Seq.d/                       1009   0.0
VFF683 (VFF683Q) /CSM/VF/VFF6-D/VFF683Q.Seq.d/                       1009   0.0
SSI524 (SSI524Q) /CSM/SS/SSI5-A/SSI524Q.Seq.d/                       1009   0.0
SFB492 (SFB492Q) /CSM/SF/SFB4-D/SFB492Q.Seq.d/                       1009   0.0
CHA557 (CHA557Q) /CSM/CH/CHA5-C/CHA557Q.Seq.d/                       1009   0.0
CHA378 (CHA378Q) /CSM/CH/CHA3-D/CHA378Q.Seq.d/                       1009   0.0
CFD785 (CFD785Q) /CSM/CF/CFD7-D/CFD785Q.Seq.d/                       1009   0.0
own update 2002.11.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.  1009   0.0    1
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.   965   0.0    15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   5e-06  21
CP000013|CP000013.1 Borrelia garinii PBi, complete genome.         36   5e-05  23
BX572093|BX572093.1 Prochlorococcus marinus MED4 complete genome; segment 4/5.    30   1e-04  19
AC006875|AC006875.1 Caenorhabditis elegans clone Y54F10x, WORKING DRAFT SEQUENCE, 25 unordered pieces.    34   2e-04  11
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34   3e-04  17
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   4e-04  27
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of...    34   5e-04  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   6e-04  18
dna update 2004. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144745_1(AF144745|pid:none) Homo sapiens guanine aminohydrolas...   153   1e-35
AB033084_1(AB033084|pid:none) Homo sapiens mRNA for KIAA1258 pro...   153   1e-35
(Q9Y2T3) RecName: Full=Guanine deaminase;          Short=Guanase...   153   1e-35
AK157014_1(AK157014|pid:none) Mus musculus activated spleen cDNA...   152   1e-35
AF369885_1(AF369885|pid:none) Mus spretus guanine deaminase (Gda...   152   1e-35
AF245172_1(AF245172|pid:none) Rattus norvegicus guanine deaminas...   152   2e-35
(Q5RAV9) RecName: Full=Guanine deaminase;          Short=Guanase...   150   9e-35
AY924419_1(AY924419|pid:none) Trimastix pyriformis ATCC50562 gua...   150   9e-35
BC082390_1(BC082390|pid:none) Xenopus laevis hypothetical protei...   147   8e-34
CP000499_600(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   144   4e-33
protein update 2009. 3.29
PSORT 

 psg: 0.67  gvh: 0.32  alm: 0.24  top: 0.40  tms: 0.20  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for CHA378 is end
5' end seq. ID CHA378F
5' end seq. 
>CHA378F.Seq
AATTGAAATAATATAATAAATAAAAAAATGATGAAAGCCAATAAAATTATAAAATTATTT
AAAGGTACAGTTATACATTCAATAGAGATTGGTAAAGTTGAAATTTTACCAAATTCATTA
ATTGGTATTGATGAAGATGGTGTAATTCAACATATGAAATCAAATTATGAAGATTTGAAA
CAATTAGAAAAGGATGTAACAATGATTTGTACAGATAATGGTATTAATGAGCAAGAATCA
GTGATTGATATGGGTAATAAATTTTTAATTCCAGGTTTTATTGATACACATGCTCATGCA
CCACAATATCATAATGCAGGCACAGGTACAGATTTACCATTATTAAAATGGTTAGAGAAA
TACACATTCCCAGTAGAGAGTAAATTCAAGGATTTAATATTTGCGGAGAATGTTTATGGT
AAAGTTGTAGACCGTATGTTACGTCATGGTACCACTACCTGTTGTTATTATGCAACCATT
CATTTGGAGGCAAGTGAACTATTGGCAGAGATTGTATCAAAACGTGGTCAACGTGCATTC
ATTGGTAAAGTTTGTATGGATCGTCATTCACCNNNNNNNNNN
Length of 5' end seq. 582
3' end seq. ID CHA378Z
3' end seq. 
>CHA378Z.Seq
NNNNNNNNNNCGATGTTTTTTTTGAAAACTCCAAAAAACTATTTCAAGGAATTGATAAAG
CAGAAAAGTCTCAATTTCTTACCAAGTTCTCATCTTTGTTTGGGGTAATATCAGGATTTT
TAGGAATTGGTAGTGTAACTGCGATTGGAGCTACTGAAGCTGTTGGTGTCACGTCTNTGA
TCGCTGTAGGAGCCACTTCACTATCAGTTGTTGCGCCTATTTGTGCTCCAGTACTTTTAA
CATTTGGTTGCCTTGTTGGTGCTTTTATTTCATTTTACAAGCAATCAGTAGCAAGAGATA
AAAAATTGAAAACTTTAAAATCTCTTCTTTCCTATTATATGGAAAATATAGAACTAATCT
CCCAAGTAACTGATGAAACAACAAAATTAATATATCATGAATTAAAAGAGAAGGTTCTTG
AATTCAAAAAGTTGGAAGCAAATTTAAAAATTGATTTTGATTTATCTCCTATCAAAGATC
AATTTAAATCAATTACTTCAAAACAAAATTTAAC
Length of 3' end seq. 514
Connected seq. ID CHA378P
Connected seq. 
>CHA378P.Seq
AATTGAAATAATATAATAAATAAAAAAATGATGAAAGCCAATAAAATTATAAAATTATTT
AAAGGTACAGTTATACATTCAATAGAGATTGGTAAAGTTGAAATTTTACCAAATTCATTA
ATTGGTATTGATGAAGATGGTGTAATTCAACATATGAAATCAAATTATGAAGATTTGAAA
CAATTAGAAAAGGATGTAACAATGATTTGTACAGATAATGGTATTAATGAGCAAGAATCA
GTGATTGATATGGGTAATAAATTTTTAATTCCAGGTTTTATTGATACACATGCTCATGCA
CCACAATATCATAATGCAGGCACAGGTACAGATTTACCATTATTAAAATGGTTAGAGAAA
TACACATTCCCAGTAGAGAGTAAATTCAAGGATTTAATATTTGCGGAGAATGTTTATGGT
AAAGTTGTAGACCGTATGTTACGTCATGGTACCACTACCTGTTGTTATTATGCAACCATT
CATTTGGAGGCAAGTGAACTATTGGCAGAGATTGTATCAAAACGTGGTCAACGTGCATTC
ATTGGTAAAGTTTGTATGGATCGTCATTCACC----------CGATGTTTTTTTTGAAAA
CTCCAAAAAACTATTTCAAGGAATTGATAAAGCAGAAAAGTCTCAATTTCTTACCAAGTT
CTCATCTTTGTTTGGGGTAATATCAGGATTTTTAGGAATTGGTAGTGTAACTGCGATTGG
AGCTACTGAAGCTGTTGGTGTCACGTCTNTGATCGCTGTAGGAGCCACTTCACTATCAGT
TGTTGCGCCTATTTGTGCTCCAGTACTTTTAACATTTGGTTGCCTTGTTGGTGCTTTTAT
TTCATTTTACAAGCAATCAGTAGCAAGAGATAAAAAATTGAAAACTTTAAAATCTCTTCT
TTCCTATTATATGGAAAATATAGAACTAATCTCCCAAGTAACTGATGAAACAACAAAATT
AATATATCATGAATTAAAAGAGAAGGTTCTTGAATTCAAAAAGTTGGAAGCAAATTTAAA
AATTGATTTTGATTTATCTCCTATCAAAGATCAATTTAAATCAATTACTTCAAAACAAAA
TTTAAC
Length of connected seq. 1076
Full length Seq ID -
Full length Seq. -
Length of full length seq. -