NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHA364
Library CH
(Link to library)
Clone ID CHA364
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12912-1|Contig-U16381-1
Original site URL
Representative seq. ID CHA364P
(Link to Original site)
Representative DNA sequence 
>CHA364 (CHA364Q) /CSM/CH/CHA3-C/CHA364Q.Seq.d/
CACTGTTGGCCTACTGGTATTGTAGTATTTTGTTCATATTCAAATTAAATATCAACACAA
TTAAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAA
AAAAAAAAAACCNAAAAAAAAAXXXXXXXXXXTGGTCATTTGGTTTTAGGTGATTTTGGT
AGTTCGAAATTAGCAAATAATAGTGGTGGTGGTGGTGGTAATTTTGGTAATACATTAACA
GTGCCAATGTCAACATCATATTCAACATCACCATCGTCATCAATTTCATCATCATTATTG
GGTGGTAGTGGCGGATTTACACCATCACATTGGAATGGAATGGCTGGAAGTGCAGGTTCA
TCATTTGGTTCTTCATCTTTGGGTAGATCATTCGATAATACACCACCAAATTTCAATTCA
TTCCTAAGAAATCCTCATAGTTCCTATACTTCCTATATTGGTACTCCACAATATATGGCA
GTTGAGGTGGTTCAAGGTGTAAATTATTCAAAACTTTGTGATTTTTGGTCATTGGGTGCT
ATCCTTTTCGAATTGGTAACTGGTCAAGCTTTATTTGTTGAATCACCAGATACAACCGAA
CAAAAGATTAGAGAAAACATTGGTAATTGGAGAGGTCTTTTAAATACTGCAGTACAAAAG
AATCAACCAATGTCAAAACAAGCTGAATCTTTAATTAGAGAATGTATTGCTCCAGAACGT
AAACGTCCTGATGCTTCAACCATTAAAAAACATCCATTCTTTGAAGGTATTAATTGGGAA
GAAATGGCAAATTTCAATGTTNAACCACCTTTNAACCAACTTATCAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllvl*yfvhiqikyqhn*kklklnl*NQFVTKTSNLKKKKPKKK---

---GHLVLGDFGSSKLANNSGGGGGNFGNTLTVPMSTSYSTSPSSSISSSLLGGSGGFTP
SHWNGMAGSAGSSFGSSSLGRSFDNTPPNFNSFLRNPHSSYTSYIGTPQYMAVEVVQGVN
YSKLCDFWSLGAILFELVTGQALFVESPDTTEQKIRENIGNWRGLLNTAVQKNQPMSKQA
ESLIRECIAPERKRPDASTIKKHPFFEGINWEEMANFNVXPPXNQLIK
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgivvfcsysn*istqlkkvkikfvksicnkn**fkkkktxkk---

---wsfgfr*fw*feisk**wwwww*fw*yinsanvniifnitivinfiiiigw*wriyt
itlewngwkcrfiiwffifg*iir*yttkfqfipkkss*flyflywystiygs*ggsrck
lfktl*flvigcypfrignwssfic*itrynrtkd*rkhw*lersfkycstkestnvkts
*ifn*rmycsrt*ts*cfnh*ktsil*ry*lgrngkfqcxttfxptyq

Frame B:
tvgllvl*yfvhiqikyqhn*kklklnl*NQFVTKTSNLKKKKPKKK---

---GHLVLGDFGSSKLANNSGGGGGNFGNTLTVPMSTSYSTSPSSSISSSLLGGSGGFTP
SHWNGMAGSAGSSFGSSSLGRSFDNTPPNFNSFLRNPHSSYTSYIGTPQYMAVEVVQGVN
YSKLCDFWSLGAILFELVTGQALFVESPDTTEQKIRENIGNWRGLLNTAVQKNQPMSKQA
ESLIRECIAPERKRPDASTIKKHPFFEGINWEEMANFNVXPPXNQLIK

Frame C:
llaywycsilfifklnintikks*n*ickinl*qklvi*kkknxkk---

---viwf*vilvvrn*qiivvvvvvilvih*qcqcqhhiqhhhrhqfhhhywvvvadlhh
higmewlevqvhhlvlhlwvdhsiihhqisihs*eilivpilpilvlhniwqlrwfkv*i
iqnfvifghwvlsfsnw*lvklyllnhqiqpnkrlektlvigevf*ilqykrinqcqnkl
nl*lenvllqnvnvlmlqplknihslkvligkkwqismxnhlxtnls
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA364 (CHA364Q) /CSM/CH/CHA3-C/CHA364Q.Seq.d/                       1195   0.0
SSL536 (SSL536Q) /CSM/SS/SSL5-B/SSL536Q.Seq.d/                       1152   0.0
SSD274 (SSD274Q) /CSM/SS/SSD2-D/SSD274Q.Seq.d/                        846   0.0
SSJ373 (SSJ373Q) /CSM/SS/SSJ3-D/SSJ373Q.Seq.d/                        505   e-142
CHC222 (CHC222Q) /CSM/CH/CHC2-A/CHC222Q.Seq.d/                        182   6e-45
CHB290 (CHB290Q) /CSM/CH/CHB2-D/CHB290Q.Seq.d/                        182   6e-45
CHA366 (CHA366Q) /CSM/CH/CHA3-C/CHA366Q.Seq.d/                        182   6e-45
CHD890 (CHD890Q) /CSM/CH/CHD8-D/CHD890Q.Seq.d/                        180   2e-44
CHC476 (CHC476Q) /CSM/CH/CHC4-D/CHC476Q.Seq.d/                        180   2e-44
CHA164 (CHA164Q) /CSM/CH/CHA1-C/CHA164Q.Seq.d/                        180   2e-44
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   6e-28  3
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   2e-24  2
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   1e-11  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    80   6e-11  1
CF089483|CF089483.1 QHM22O10.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM22O10, mRNA sequence.    58   2e-04  1
CF090807|CF090807.1 QHM6D05.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM6D05, mRNA sequence.    58   2e-04  1
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    38   0.004  9
Z98547|Z98547.2 Plasmodium falciparum MAL3P3.                      40   0.010  6
BX927349|BX927349.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    52   0.015  1
CB084130|CB084130.1 hq10c11.b1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hq10c11, mRNA sequence.    50   0.058  1
dna update 2004. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FH3) RecName: Full=Probable serine/threonine-protein kinase ...   315   8e-85
AY335703_1(AY335703|pid:none) Synthetic construct Homo sapiens s...    83   1e-14
AK304862_1(AK304862|pid:none) Homo sapiens cDNA FLJ51774 complet...    83   1e-14
AK304755_1(AK304755|pid:none) Homo sapiens cDNA FLJ50384 complet...    83   1e-14
BC091415_1(BC091415|pid:none) Rattus norvegicus serine/threonine...    82   2e-14
BX649380_5(BX649380|pid:none) Zebrafish DNA sequence from clone ...    82   3e-14
AP007155_892(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    82   3e-14
DQ116039_1(DQ116039|pid:none) Aspergillus oryzae serine/threonin...    82   3e-14
BC044485_1(BC044485|pid:none) Danio rerio zgc:55777, mRNA (cDNA ...    82   3e-14
BC151309_1(BC151309|pid:none) Bos taurus serine/threonine kinase...    81   3e-14
protein update 2009. 3.29
PSORT 

 psg: 0.22  gvh: 0.41  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.18
 nuc: 0.31  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHA364 is nuc
5' end seq. ID CHA364F
5' end seq. 
>CHA364F.Seq
CACTGTTGGCCTACTGGTATTGTAGTATTTTGTTCATATTCAAATTAAATATCAACACAA
TTAAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAA
AAAAAAAAAACCNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 152
3' end seq. ID CHA364Z
3' end seq. 
>CHA364Z.Seq
NNNNNNNNNNTGGTCATTTGGTTTTAGGTGATTTTGGTAGTTCGAAATTAGCAAATAATA
GTGGTGGTGGTGGTGGTAATTTTGGTAATACATTAACAGTGCCAATGTCAACATCATATT
CAACATCACCATCGTCATCAATTTCATCATCATTATTGGGTGGTAGTGGCGGATTTACAC
CATCACATTGGAATGGAATGGCTGGAAGTGCAGGTTCATCATTTGGTTCTTCATCTTTGG
GTAGATCATTCGATAATACACCACCAAATTTCAATTCATTCCTAAGAAATCCTCATAGTT
CCTATACTTCCTATATTGGTACTCCACAATATATGGCAGTTGAGGTGGTTCAAGGTGTAA
ATTATTCAAAACTTTGTGATTTTTGGTCATTGGGTGCTATCCTTTTCGAATTGGTAACTG
GTCAAGCTTTATTTGTTGAATCACCAGATACAACCGAACAAAAGATTAGAGAAAACATTG
GTAATTGGAGAGGTCTTTTAAATACTGCAGTACAAAAGAATCAACCAATGTCAAAACAAG
CTGAATCTTTAATTAGAGAATGTATTGCTCCAGAACGTAAACGTCCTGATGCTTCAACCA
TTAAAAAACATCCATTCTTTGAAGGTATTAATTGGGAAGAAATGGCAAATTTCAATGTTN
AACCACCTTTNAACCAACTTATCAAG
Length of 3' end seq. 686
Connected seq. ID CHA364P
Connected seq. 
>CHA364P.Seq
CACTGTTGGCCTACTGGTATTGTAGTATTTTGTTCATATTCAAATTAAATATCAACACAA
TTAAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAA
AAAAAAAAAACCNAAAAAAAAA----------TGGTCATTTGGTTTTAGGTGATTTTGGT
AGTTCGAAATTAGCAAATAATAGTGGTGGTGGTGGTGGTAATTTTGGTAATACATTAACA
GTGCCAATGTCAACATCATATTCAACATCACCATCGTCATCAATTTCATCATCATTATTG
GGTGGTAGTGGCGGATTTACACCATCACATTGGAATGGAATGGCTGGAAGTGCAGGTTCA
TCATTTGGTTCTTCATCTTTGGGTAGATCATTCGATAATACACCACCAAATTTCAATTCA
TTCCTAAGAAATCCTCATAGTTCCTATACTTCCTATATTGGTACTCCACAATATATGGCA
GTTGAGGTGGTTCAAGGTGTAAATTATTCAAAACTTTGTGATTTTTGGTCATTGGGTGCT
ATCCTTTTCGAATTGGTAACTGGTCAAGCTTTATTTGTTGAATCACCAGATACAACCGAA
CAAAAGATTAGAGAAAACATTGGTAATTGGAGAGGTCTTTTAAATACTGCAGTACAAAAG
AATCAACCAATGTCAAAACAAGCTGAATCTTTAATTAGAGAATGTATTGCTCCAGAACGT
AAACGTCCTGATGCTTCAACCATTAAAAAACATCCATTCTTTGAAGGTATTAATTGGGAA
GAAATGGCAAATTTCAATGTTNAACCACCTTTNAACCAACTTATCAAG
Length of connected seq. 818
Full length Seq ID -
Full length Seq. -
Length of full length seq. -