CHA362
Library CH
(Link to library)
Clone ID CHA362
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1|Contig-U15687-1
Original site URL
Representative seq. ID CHA362P
(Link to Original site)
Representative DNA sequence
>CHA362 (CHA362Q) /CSM/CH/CHA3-C/CHA362Q.Seq.d/
ACTGTTGGCCTACTGGNATTTTAAATATAATTACAATTTAAATTTTTTTTAATTGTTTAA
AAAAAGGTCATCAAAAAAAAAAAAAAAAAAATTTTTTTNTTTAAAAAAAAAAXXXXXXXX
XXANGTTTGATAATTGTNATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTAT
GCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATT
GTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACAT
ACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTG
TTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTC
CAACTCCATCACCAACCACTGTCCCACCAAGACCAACCCCAACTCCATTACCAGCTGATC
CACCACCATATGATTTAGAAGAAGGTTGTTTAGTATGTCGTGATCTTGATTGTGAAAAAA
ACAGGTAAGAGTTGTACATACCTTGAAAATGAAACAATTCGTTTATTTGAATGTAAAGGT
GTAGGTTGTTGTAAATATACACCAACTTGTTATTGATCAATTTTT
sequence update 2002.10.25
Translated Amino Acid sequence
llaywxfkynynlnff*LFKKRSSKKKKKKFFXLKKK---

---XFDNCXACNAVDTCITNDLCFPRECNPRGNPPCLINPINCTSTDPCIFSYCENGVCI
PTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPTPSPTTVPPRPTPTPLP
ADPPPYDLEEGCLVCRDLDCEKNR*elyip*k*nnsfi*m*rcrll*iytnlllinf


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxf*i*lqfkffliv*kkvikkkkkkifxfkkk---

---XFDNCXACNAVDTCITNDLCFPRECNPRGNPPCLINPINCTSTDPCIFSYCENGVCI
PTYICTPTPSVTPTVTPTVTPTVTPTVTPTVTPTVTPTPTTTPTPSPTTVPPRPTPTPLP
ADPPPYDLEEGCLVCRDLDCEKNR*elyip*k*nnsfi*m*rcrll*iytnlllinf

Frame B:
llaywxfkynynlnff*LFKKRSSKKKKKKFFXLKKK---

---xliivmhvml*ilvlqmiyasqgnviqegthlv**tllivqalihaffhivkmvyvf
qhtfvlqlhl*lqllpqlllqllpqllhqpllqplpqlqlqlqlhhqplshqdqpqlhyq
lihhhmi*kkvv*yvvilivkktgksctylenetirlfeckgvgcckytptcy*sif

Frame C:
cwptgilniiti*iffnclkkghqkkkkknffx*kk---

---v**lxcm*ccrylyyk*fmlpkgm*skreptlfnkpy*lykh*smhffil*kwcmys
nihlysnsicnsncypncysncypncytnrysnrypnsnynsnsitnhcptktnpnsits
*stti*frrrlfsms*s*l*kkqvrvvhtlkmkqfvylnvkv*vvvnihqlvidqf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH875 (SSH875Q) /CSM/SS/SSH8-D/SSH875Q.Seq.d/ 539 e-152
SLH793 (SLH793Q) /CSM/SL/SLH7-D/SLH793Q.Seq.d/ 539 e-152
SLA680 (SLA680Q) /CSM/SL/SLA6-D/SLA680Q.Seq.d/ 539 e-152
SHF881 (SHF881Q) /CSM/SH/SHF8-D/SHF881Q.Seq.d/ 539 e-152
SFJ353 (SFJ353Q) /CSM/SF/SFJ3-C/SFJ353Q.Seq.d/ 539 e-152
SFI265 (SFI265Q) /CSM/SF/SFI2-C/SFI265Q.Seq.d/ 539 e-152
CHN355 (CHN355Q) /CSM/CH/CHN3-C/CHN355Q.Seq.d/ 539 e-152
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/ 539 e-152
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/ 539 e-152
CHD166 (CHD166Q) /CSM/CH/CHD1-C/CHD166Q.Seq.d/ 539 e-152

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 50 7e-07 2
AC149039|AC149039.1 Medicago truncatula chromosome 7 clone mth2-4g23, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 42 0.008 3
M20909|M20909.1 Dictyostelium discoideum cell surface glycoprotein PsA precursor (D19) gene, complete cds. 42 0.025 2
X15980|X15980.1 Dictyostelium discoideum D19 gene 5'-flanking region. 42 0.057 2
AL929330|AL929330.14 Zebrafish DNA sequence from clone CH211-26A17. 48 0.18 1
AC128037|AC128037.3 Rattus norvegicus clone CH230-480P10, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 46 0.70 1
BD101624|BD101624.1 Novel genes cloned in humanneuroblastoma and fragments thereof. 46 0.70 1
BD021686|BD021686.1 Novel gene and novel gene fragment cloned in human neuroblastoma. 46 0.70 1
AC020651|AC020651.19 Homo sapiens 3 BAC RP11-49I4 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 46 0.70 1
AC055706|AC055706.25 Homo sapiens chromosome 3 clone RP11-520H5, WORKING DRAFT SEQUENCE, 31 unordered pieces. 46 0.70 1
dna update 2004. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 159 4e-54
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 56 1e-06
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 49 9e-05
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 45 0.002
EF125736_1(EF125736|pid:none) Nyctotherus ovalis hypothetical pr... 37 0.60
CR933357_1(CR933357|pid:none) Mini antigen, Paramecium tetraurel... 34 3.9
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 33 5.1
AF240773_1(AF240773|pid:none) Chlamydophila abortus EBA small cy... 33 5.1
AM746676_9366(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 33 6.7
AB255883_1(AB255883|pid:none) Leucophaea maderae VgR mRNA for vi... 33 8.7
protein update 2009. 3.29
PSORT

psg: 0.50 gvh: 0.49 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.40 mip: 0.02
nuc: 0.18 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial

>> prediction for CHA362 is cyt

5' end seq. ID CHA362F
5' end seq.
>CHA362F.Seq
ACTGTTGGCCTACTGGNATTTTAAATATAATTACAATTTAAATTTTTTTTAATTGTTTAA
AAAAAGGTCATCAAAAAAAAAAAAAAAAAAATTTTTTTNTTTAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID CHA362Z
3' end seq.
>CHA362Z.Seq
NNNNNNNNNNANGTTTGATAATTGTNATGCATGTAATGCTGTAGATACTTGTATTACAAA
TGATTTATGCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCC
TATTAATTGTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTAT
TCCAACATACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTAC
TCCAACTGTTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAAC
TACAACTCCAACTCCATCACCAACCACTGTCCCACCAAGACCAACCCCAACTCCATTACC
AGCTGATCCACCACCATATGATTTAGAAGAAGGTTGTTTAGTATGTCGTGATCTTGATTG
TGAAAAAAACAGGTAAGAGTTGTACATACCTTGAAAATGAAACAATTCGTTTATTTGAAT
GTAAAGGTGTAGGTTGTTGTAAATATACACCAACTTGTTATTGATCAATTTTT
Length of 3' end seq. 533
Connected seq. ID CHA362P
Connected seq.
>CHA362P.Seq
ACTGTTGGCCTACTGGNATTTTAAATATAATTACAATTTAAATTTTTTTTAATTGTTTAA
AAAAAGGTCATCAAAAAAAAAAAAAAAAAAATTTTTTTNTTTAAAAAAAAAA--------
--ANGTTTGATAATTGTNATGCATGTAATGCTGTAGATACTTGTATTACAAATGATTTAT
GCTTCCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATAAACCCTATTAATT
GTACAAGCACTGATCCATGCATTTTTTCATATTGTGAAAATGGTGTATGTATTCCAACAT
ACATTTGTACTCCAACTCCATCTGTAACTCCAACTGTTACCCCAACTGTTACTCCAACTG
TTACCCCAACTGTTACACCAACCGTTACTCCAACCGTTACCCCAACTCCAACTACAACTC
CAACTCCATCACCAACCACTGTCCCACCAAGACCAACCCCAACTCCATTACCAGCTGATC
CACCACCATATGATTTAGAAGAAGGTTGTTTAGTATGTCGTGATCTTGATTGTGAAAAAA
ACAGGTAAGAGTTGTACATACCTTGAAAATGAAACAATTCGTTTATTTGAATGTAAAGGT
GTAGGTTGTTGTAAATATACACCAACTTGTTATTGATCAATTTTT
Length of connected seq. 635
Full length Seq ID -
Full length Seq. -
Length of full length seq. -