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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHA332
Library CH
(Link to library)
Clone ID CHA332
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16371-1|Contig-U16524-1
Original site URL
Representative seq. ID CHA332P
(Link to Original site)
Representative DNA sequence 
>CHA332 (CHA332Q) /CSM/CH/CHA3-B/CHA332Q.Seq.d/
GCCTACTGGNAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXX
XXXXXXAGGATTTACAGTTACTGAATCATTAGGTTTAAAGTCTCCAAAGGAAGCATCACC
AGATGCAATACCAGTATTATTTAGTTGGGCCGGTGGATTTGGTGTTGATAGTGTCCCAAC
CGTTCATAATAAACAATTTTGGATAAATCGTTTATCAGTATTACAATGTTTAATCACTTG
TTTATCTGAACAATTGTACGTACCACAAGATTCTGTTTCAACATTCAGAAGTAAATGGTT
AGATTGGATAACTCATACTCAAGAATATTATACTGAAGCATTGTTATTCTCTTTAATCAA
TACATTTGCAACATTTGATCCAATAGGTTGGGGTATTCCATACAATCACTTAATGTATTC
AGATGATCATGAAATTTGTTCANAATTATCAATTCAAATTTTAAATGNACTTTTAACATA
TGATCCAATTGAAAATATTGAACCATTATCACATCCATCTGCAAAAATCTCAACCCCTCC
TTCAATAACAACAACAAAAACCNCTGAAATAATAGAAGAACAAGAAAAAAAAGATCAAGA
AAATAAACAAGTTGAAGAGAACAAAGAAAANAAGAAAAAAAAGANNAAGAAAAAAAAGAT
AAGCAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ptgnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK--
-

---GFTVTESLGLKSPKEASPDAIPVLFSWAGGFGVDSVPTVHNKQFWINRLSVLQCLIT
CLSEQLYVPQDSVSTFRSKWLDWITHTQEYYTEALLFSLINTFATFDPIGWGIPYNHLMY
SDDHEICSXLSIQILNXLLTYDPIENIEPLSHPSAKISTPPSITTTKTXEIIEEQEKKDQ
ENKQVEENKEXKKKKXKKKKISKK
Translated Amino Acid sequence (All Frames) 
Frame A:
aywxlsnnnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink**kk--
-

---riysy*iirfkvskgsitrcntsii*lgrwiwc**cpnrs**tildksfisitmfnh
lfi*tivrttrfcfniqk*mvrldnsysrily*sivilfnqyicni*snrlgysiqslnv
fr*s*nlfxiinsnfkxtfni*sn*ky*tiitsicknlnpsfnnnnknx*nnrrtrkkrs
rk*ts*reqrkxekkxxekkdkqkk

Frame B:
ptgnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK--
-

---GFTVTESLGLKSPKEASPDAIPVLFSWAGGFGVDSVPTVHNKQFWINRLSVLQCLIT
CLSEQLYVPQDSVSTFRSKWLDWITHTQEYYTEALLFSLINTFATFDPIGWGIPYNHLMY
SDDHEICSXLSIQILNXLLTYDPIENIEPLSHPSAKISTPPSITTTKTXEIIEEQEKKDQ
ENKQVEENKEXKKKKXKKKKISKK

Frame C:
llxtq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikkk--
-

---dlqllnh*v*slqrkhhqmqyqyylvgpvdlvlivsqpfiinnfg*ivyqyynv*sl
vylnnctyhkilfqhsevng*ig*lilkniilkhcysl*sihlqhliq*vgvfhtit*ci
qmimkfvxnyqfkf*mxf*hmiqlkilnhyhihlqksqpllq*qqqkplk**knkkkkik
kinklkrtkkxrkkrxrkkr*akk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA332 (CHA332Q) /CSM/CH/CHA3-B/CHA332Q.Seq.d/                       1037   0.0
SFD776 (SFD776Q) /CSM/SF/SFD7-D/SFD776Q.Seq.d/                        965   0.0
SFJ642 (SFJ642Q) /CSM/SF/SFJ6-B/SFJ642Q.Seq.d/                        835   0.0
SFJ263 (SFJ263Q) /CSM/SF/SFJ2-C/SFJ263Q.Seq.d/                        835   0.0
AHQ247 (AHQ247Q) /CSM/AH/AHQ2-B/AHQ247Q.Seq.d/                        835   0.0
AFM746 (AFM746Q) /CSM/AF/AFM7-B/AFM746Q.Seq.d/                        829   0.0
CFA738 (CFA738Q) /CSM/CF/CFA7-B/CFA738Q.Seq.d/                        821   0.0
AFC730 (AFC730Q) /CSM/AF/AFC7-B/AFC730Q.Seq.d/                        817   0.0
CHK716 (CHK716Q) /CSM/CH/CHK7-A/CHK716Q.Seq.d/                        733   0.0
VHN140 (VHN140Q) /CSM/VH/VHN1-B/VHN140Q.Seq.d/                        198   9e-50
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM774815|BM774815.1 ra98a03.y1 Meloidogyne incognita egg pAMP1 Bird Meloidogyne incognita cDNA 5', mRNA sequence.    52   0.014  1
AL022537|AL022537.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F4D11 (ESSAII  project).    34   0.14   6
BX470188|BX470188.11 Zebrafish DNA sequence from clone DKEY-206F10 in linkage group 20.    38   0.31   6
AC149568|AC149568.2 Papio anubis clone RP41-471J16, WORKING DRAFT SEQUENCE, 3 ordered pieces.    40   0.44   5
AC117584|AC117584.11 Mus musculus chromosome 3, clone RP23-151D16, complete sequence.    42   0.53   5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   0.54   9
AC137973|AC137973.1 Mus musculus clone RP23-107N10, LOW-PASS SEQUENCE SAMPLING.    38   0.60   2
AC094171|AC094171.9 Rattus norvegicus clone CH230-2M12, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42   0.67   3
AC021917|AC021917.3 Homo sapiens chromosome 15 clone RP11-278A11 map 15, LOW-PASS SEQUENCE SAMPLING.    38   0.73   3
AL935305|AL935305.13 Zebrafish DNA sequence from clone CH211-226I4 in linkage group 23.    46   0.86   1
dna update 2004. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI...    76   1e-12
AL603828_11(AL603828|pid:none) Mouse DNA sequence from clone RP2...    76   1e-12
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho...    76   1e-12
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ...    76   1e-12
AL137556_1(AL137556|pid:none) Homo sapiens mRNA; cDNA DKFZp434I1...    75   2e-12
(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A...    75   2e-12
AK074401_1(AK074401|pid:none) Homo sapiens cDNA FLJ23821 fis, cl...    75   2e-12
T46395(T46395)hypothetical protein DKFZp434I1120.1 - human (frag...    75   2e-12
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet...    74   7e-12
BC150166_1(BC150166|pid:none) Xenopus laevis hypothetical protei...    73   1e-11
protein update 2009. 3.29
PSORT 

 psg: 0.81  gvh: 0.64  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.14  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  8.0 %: peroxisomal
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHA332 is cyt
5' end seq. ID CHA332F
5' end seq. 
>CHA332F.Seq
GCCTACTGGNAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNN
NNNNNN
Length of 5' end seq. 186
3' end seq. ID CHA332Z
3' end seq. 
>CHA332Z.Seq
NNNNNNNNNNAGGATTTACAGTTACTGAATCATTAGGTTTAAAGTCTCCAAAGGAAGCAT
CACCAGATGCAATACCAGTATTATTTAGTTGGGCCGGTGGATTTGGTGTTGATAGTGTCC
CAACCGTTCATAATAAACAATTTTGGATAAATCGTTTATCAGTATTACAATGTTTAATCA
CTTGTTTATCTGAACAATTGTACGTACCACAAGATTCTGTTTCAACATTCAGAAGTAAAT
GGTTAGATTGGATAACTCATACTCAAGAATATTATACTGAAGCATTGTTATTCTCTTTAA
TCAATACATTTGCAACATTTGATCCAATAGGTTGGGGTATTCCATACAATCACTTAATGT
ATTCAGATGATCATGAAATTTGTTCANAATTATCAATTCAAATTTTAAATGNACTTTTAA
CATATGATCCAATTGAAAATATTGAACCATTATCACATCCATCTGCAAAAATCTCAACCC
CTCCTTCAATAACAACAACAAAAACCNCTGAAATAATAGAAGAACAAGAAAAAAAAGATC
AAGAAAATAAACAAGTTGAAGAGAACAAAGAAAANAAGAAAAAAAAGANNAAGAAAAAAA
AGATAAGCAAAAAAAA
Length of 3' end seq. 616
Connected seq. ID CHA332P
Connected seq. 
>CHA332P.Seq
GCCTACTGGNAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAA
TCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATA
AATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA----
------AGGATTTACAGTTACTGAATCATTAGGTTTAAAGTCTCCAAAGGAAGCATCACC
AGATGCAATACCAGTATTATTTAGTTGGGCCGGTGGATTTGGTGTTGATAGTGTCCCAAC
CGTTCATAATAAACAATTTTGGATAAATCGTTTATCAGTATTACAATGTTTAATCACTTG
TTTATCTGAACAATTGTACGTACCACAAGATTCTGTTTCAACATTCAGAAGTAAATGGTT
AGATTGGATAACTCATACTCAAGAATATTATACTGAAGCATTGTTATTCTCTTTAATCAA
TACATTTGCAACATTTGATCCAATAGGTTGGGGTATTCCATACAATCACTTAATGTATTC
AGATGATCATGAAATTTGTTCANAATTATCAATTCAAATTTTAAATGNACTTTTAACATA
TGATCCAATTGAAAATATTGAACCATTATCACATCCATCTGCAAAAATCTCAACCCCTCC
TTCAATAACAACAACAAAAACCNCTGAAATAATAGAAGAACAAGAAAAAAAAGATCAAGA
AAATAAACAAGTTGAAGAGAACAAAGAAAANAAGAAAAAAAAGANNAAGAAAAAAAAGAT
AAGCAAAAAAAA
Length of connected seq. 782
Full length Seq ID -
Full length Seq. -
Length of full length seq. -