CHA316
Library CH
(Link to library)
Clone ID CHA316
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16462-1
Original site URL
Representative seq. ID CHA316P
(Link to Original site)
Representative DNA sequence
>CHA316 (CHA316Q) /CSM/CH/CHA3-A/CHA316Q.Seq.d/
ACTGTTGGCCTACTGGNTATTTTCAAAAAATAAATAAATAAACAAATAAATAAACAAATA
AATAAACAAACAAATTAATATTAATATTAATAATGAATCCATTAACATTAGTACGTGAAA
CAACAGCTTGGGTATCAGGATTATCAAAGCATGTTAAAATTAATAACGAAGCATTAGATA
AAGAATGTGAGGATTTTTTAAATAAACATAAAATTAAAGCACATAAAGAAATTTGGGCAG
ATAATTGGTTCCACTATTGTGATATTGATATTGAAAATAAAGAATCAACATTTACAGGAT
TAACTGCAAAATATATTTTAGTATTGGATACATTAAACTTTTGTTTTTGGCCAGACTCAG
AATTTGAATATCATCATTTAGCAAGAGGTTTAAAGAATGCATTAATTGCAAATCCAAAAT
GTTTTGATGCTGATCAATTAATTAAAGTTACAAGTGAAACTATTCATCAATGGTTTGGTA
AAGATTTACCAAATACTTCAGAACGTGTTAGATTAATTAGAGAAGTTGGTACTGTTTTAA
TTGAATATTTTAATGGTAGCATTAAAGAAATGATTTTAXXXXXXXXXXTCGTTTCAATCC
ATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTAT
GGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACC
ATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTT
CTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAA
TTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGT
CAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCC
ACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATA
CAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGA
TGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGCCACCATCAAAGA
AATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCNACAAAGATTTAGGTGCTCGTTTA
TGTAAGGGTCTT
sequence update 2002.10.25
Translated Amino Acid sequence
cwptgyfqkink*tnk*tnk*TNKLILILIMNPLTLVRETTAWVSGLSKHVKINNEALDK
ECEDFLNKHKIKAHKEIWADNWFHYCDIDIENKESTFTGLTAKYILVLDTLNFCFWPDSE
FEYHHLARGLKNALIANPKCFDADQLIKVTSETIHQWFGKDLPNTSERVRLIREVGTVLI
EYFNGSIKEMIL---

---RFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIEPSPDK
MLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPN
SFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHM
SGATIKEIQVRAVSNFYKATKI*vlvyvrv


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxifkk*inkqinkqinkqtn*y*y***ih*h*yvkqqlgyqdyqsmlklitkh*i
knvrif*iniklkhikkfgqiigstivililkiknqhlqd*lqnif*ywih*tfvfgqtq
nlniii*qev*rmh*lqiqnvlmlin*lklqvklfinglvkiyqilqnvld*leklvlf*
lnilmvalkk*f---

---sfqsircnkdlvtqrlsinsnwsygfes*srellc*s*tsclltiphgsry*titr*
dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*ww*rsklstk
lfrwsratsricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*rcqisfrl*fsrsh
vrchhqrnssscrfkllqgxkdlgarlckgl

Frame B:
llaywxfsknk*ink*ink*inkqinininnesinist*nnslgiriikac*n**rsir*
rm*gffk*t*n*st*rnlgr*lvpll*y*y*k*riniyrinckiyfsigyikllflarlr
i*issfskrfkecinckskmf*c*sin*syk*nyssmvw*rftkyfrtc*in*rswycfn
*if*w*h*rndf---

---RFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIEPSPDK
MLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPN
SFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHM
SGATIKEIQVRAVSNFYKATKI*vlvyvrv

Frame C:
cwptgyfqkink*tnk*tnk*TNKLILILIMNPLTLVRETTAWVSGLSKHVKINNEALDK
ECEDFLNKHKIKAHKEIWADNWFHYCDIDIENKESTFTGLTAKYILVLDTLNFCFWPDSE
FEYHHLARGLKNALIANPKCFDADQLIKVTSETIHQWFGKDLPNTSERVRLIREVGTVLI
EYFNGSIKEMIL---

---vsihsm*qrfghtktih*fklvvwf*iviqritllklnklpshhptwfqvlnhhqir
cykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnvmvswlsmvmvvkvqtinqt
lsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidsclkmpnlvssli*svtc
pvppskkfkfvpfqtftrxqrfrcsfm*gs

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHA316 (CHA316Q) /CSM/CH/CHA3-A/CHA316Q.Seq.d/ 2151 0.0
AFD822 (AFD822Q) /CSM/AF/AFD8-A/AFD822Q.Seq.d/ 1223 0.0
SFF245 (SFF245Q) /CSM/SF/SFF2-B/SFF245Q.Seq.d/ 1215 0.0
VFM191 (VFM191Q) /CSM/VF/VFM1-D/VFM191Q.Seq.d/ 1209 0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 1209 0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1209 0.0
SFI642 (SFI642Q) /CSM/SF/SFI6-B/SFI642Q.Seq.d/ 1209 0.0
SFE278 (SFE278Q) /CSM/SF/SFE2-D/SFE278Q.Seq.d/ 1209 0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/ 1209 0.0
CFI885 (CFI885Q) /CSM/CF/CFI8-D/CFI885Q.Seq.d/ 1209 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1158 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1158 0.0 15
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 2e-16 2
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 2e-16 2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 82 2e-16 2
AR375090|AR375090.1 Sequence 96 from patent US 6605709. 76 2e-16 2
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 2e-12 1
CD645756|CD645756.1 SSPG103 SS pectin Sclerotinia sclerotiorum cDNA similar to Peroxisomal catalase, mRNA sequence. 68 2e-12 2
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse15b01_q1c. 74 6e-09 1
AY625512|AY625512.1 Glossina morsitans morsitans clone Gmm1799 putative catalase mRNA, partial cds. 74 6e-09 1
dna update 2004. 9.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 416 e-116
(Q54II8) RecName: Full=UPF0553 protein; 338 2e-91
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 246 1e-63
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 246 1e-63
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 243 1e-62
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 241 3e-62
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 236 9e-61
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 236 2e-60
(Q9PWF7) RecName: Full=Catalase; EC=1.11.1.6; &AB03187... 236 2e-60
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 232 2e-59
protein update 2009. 3.29
PSORT

psg: 0.92 gvh: 0.58 alm: 0.39 top: 0.57 tms: 0.00 mit: 0.35 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
24.0 %: cytoplasmic
16.0 %: nuclear
8.0 %: vacuolar
8.0 %: extracellular, including cell wall
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal

>> prediction for CHA316 is mit

5' end seq. ID CHA316F
5' end seq.
>CHA316F.Seq
ACTGTTGGCCTACTGGNTATTTTCAAAAAATAAATAAATAAACAAATAAATAAACAAATA
AATAAACAAACAAATTAATATTAATATTAATAATGAATCCATTAACATTAGTACGTGAAA
CAACAGCTTGGGTATCAGGATTATCAAAGCATGTTAAAATTAATAACGAAGCATTAGATA
AAGAATGTGAGGATTTTTTAAATAAACATAAAATTAAAGCACATAAAGAAATTTGGGCAG
ATAATTGGTTCCACTATTGTGATATTGATATTGAAAATAAAGAATCAACATTTACAGGAT
TAACTGCAAAATATATTTTAGTATTGGATACATTAAACTTTTGTTTTTGGCCAGACTCAG
AATTTGAATATCATCATTTAGCAAGAGGTTTAAAGAATGCATTAATTGCAAATCCAAAAT
GTTTTGATGCTGATCAATTAATTAAAGTTACAAGTGAAACTATTCATCAATGGTTTGGTA
AAGATTTACCAAATACTTCAGAACGTGTTAGATTAATTAGAGAAGTTGGTACTGTTTTAA
TTGAATATTTTAATGGTAGCATTAAAGAAATGATTTTANNNNNNNNNN
Length of 5' end seq. 588
3' end seq. ID CHA316Z
3' end seq.
>CHA316Z.Seq
NNNNNNNNNNTCGTTTCAATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATC
CATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAG
TTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATA
AGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAA
ACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACC
AACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAA
ACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTG
GTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATT
TATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACA
TGTCCGGTGCCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCNA
CAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTT
Length of 3' end seq. 634
Connected seq. ID CHA316P
Connected seq.
>CHA316P.Seq
ACTGTTGGCCTACTGGNTATTTTCAAAAAATAAATAAATAAACAAATAAATAAACAAATA
AATAAACAAACAAATTAATATTAATATTAATAATGAATCCATTAACATTAGTACGTGAAA
CAACAGCTTGGGTATCAGGATTATCAAAGCATGTTAAAATTAATAACGAAGCATTAGATA
AAGAATGTGAGGATTTTTTAAATAAACATAAAATTAAAGCACATAAAGAAATTTGGGCAG
ATAATTGGTTCCACTATTGTGATATTGATATTGAAAATAAAGAATCAACATTTACAGGAT
TAACTGCAAAATATATTTTAGTATTGGATACATTAAACTTTTGTTTTTGGCCAGACTCAG
AATTTGAATATCATCATTTAGCAAGAGGTTTAAAGAATGCATTAATTGCAAATCCAAAAT
GTTTTGATGCTGATCAATTAATTAAAGTTACAAGTGAAACTATTCATCAATGGTTTGGTA
AAGATTTACCAAATACTTCAGAACGTGTTAGATTAATTAGAGAAGTTGGTACTGTTTTAA
TTGAATATTTTAATGGTAGCATTAAAGAAATGATTTTA----------TCGTTTCAATCC
ATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTAT
GGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACC
ATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTT
CTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAA
TTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGT
CAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCC
ACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATA
CAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGA
TGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGCCACCATCAAAGA
AATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCNACAAAGATTTAGGTGCTCGTTTA
TGTAAGGGTCTT
Length of connected seq. 1202
Full length Seq ID -
Full length Seq. -
Length of full length seq. -