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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHA306
Library CH
(Link to library)
Clone ID CHA306
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15329-1|Contig-U16343-1
Original site URL
Representative seq. ID CHA306P
(Link to Original site)
Representative DNA sequence 
>CHA306 (CHA306Q) /CSM/CH/CHA3-A/CHA306Q.Seq.d/
ACTGTTGGCCTACTGGNTATACATATAACACATATTTTAATTACAAATACACACAACTCC
TAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAACCAGTCATAGATC
AACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAATTACTTTTTACC
ATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAATTTAAATTATAT
TCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCTCGAAGCTTTATG
CCAACTCTTTACAAATGGTGCCTCTGGCAAATTGGATAAACCCGAAGAACTTGGTAAATG
TATTGGTTTAGTATGCTTAAAGACTGGAGAAAATAATGAATTCTACCGTTATATTAAAAC
CACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAATGAATTAATGGC
TGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTCGTACTGATCGTGACCTCTTATA
AACATACAATTTCCTTATTCCAAXXXXXXXXXXTNTTTAGAATTTNAAGGNTANACTGCN
ACTAGACANCAACGTNAAGTAGGGACTGGNTACTTTGATCNAGTTTNTCNAATTATCTCT
GGNGGNCNATCTTCNACNTTAGCTTTAGNAGGNTCNACTNAGGAAGAACNATTTNATGNA
CATATTGAAAANAAAAANAAAGTTGCTCATAATAATAATGGNAATAATAAAAACNAA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgytyntyfnykytqllnnkifkk*i*ekkrkpvidqqlqsikh*mkkienlitfyh
y*kkrkqvlyqmqsii*iiflhinlkeknklakifsklyanslqmvplanwinpknlvnv
lv*ya*rlekimnstvilkphslql*pmvkltlkimn*WLQSMRYLSHVSIVVLIVTSYK
HTISLFQ---

---XLEFXGXTATRXQRXVGTGYFDXVXXIISGGXSSTLALXGSTXEEXFXXHIEXKXKV
AHNNNGNNKNX
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxihithilitnthns*iikflkneykrkkenqs*inscsp*stk*kr*ri*llft
iikrkenkycikcnq*fklysyisi*krrts*qrysrsfmptlykwclwqig*trrtw*m
ywfsmlkdwrk**ilply*nhtlfnynrw*ssh*r**ingcnlcaisvmfllsy*s*pli
niqfpys---

---XLEFXGXTATRXQRXVGTGYFDXVXXIISGGXSSTLALXGSTXEEXFXXHIEXKXKV
AHNNNGNNKNX

Frame B:
llaywxyi*hif*lqihttpk**nf*kmnirekkktshrstvavhkalnekdrefnyflp
llkekktsivsnainnlnyiltyqsereeqvskdilealcqlftngasgkldkpeelgkc
iglvclktgennefyryikttlssiitdgeahikdnelmaaiyalsqscfycrtdrdll*
tynflip---

---x*nxkxxlxldxnvk*glxtlixfxxlslxxxlxx*l*xxxlrknxxmxilkxkxkl
liiimxiikt

Frame C:
cwptgytyntyfnykytqllnnkifkk*i*ekkrkpvidqqlqsikh*mkkienlitfyh
y*kkrkqvlyqmqsii*iiflhinlkeknklakifsklyanslqmvplanwinpknlvnv
lv*ya*rlekimnstvilkphslql*pmvkltlkimn*WLQSMRYLSHVSIVVLIVTSYK
HTISLFQ---

---frixrxxcx*txtxsrdwxl*ssxsnylwxxifxxsfxrxxxgrtixxty*kxkxsc
s***wx**kx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA306 (CHA306Q) /CSM/CH/CHA3-A/CHA306Q.Seq.d/                       1055   0.0
SSC735 (SSC735Q) /CSM/SS/SSC7-B/SSC735Q.Seq.d/                        872   0.0
SFJ114 (SFJ114Q) /CSM/SF/SFJ1-A/SFJ114Q.Seq.d/                        872   0.0
CHD235 (CHD235Q) /CSM/CH/CHD2-B/CHD235Q.Seq.d/                        872   0.0
CFJ395 (CFJ395Q) /CSM/CF/CFJ3-D/CFJ395Q.Seq.d/                        872   0.0
CFG493 (CFG493Q) /CSM/CF/CFG4-D/CFG493Q.Seq.d/                        872   0.0
CFD716 (CFD716Q) /CSM/CF/CFD7-A/CFD716Q.Seq.d/                        872   0.0
CFA496 (CFA496Q) /CSM/CF/CFA4-D/CFA496Q.Seq.d/                        872   0.0
AHD545 (AHD545Q) /CSM/AH/AHD5-B/AHD545Q.Seq.d/                        872   0.0
AFN446 (AFN446Q) /CSM/AF/AFN4-B/AFN446Q.Seq.d/                        872   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   147   5e-45  9
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    34   2e-04  13
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38   3e-04  12
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    36   5e-04  12
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    40   6e-04  12
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5.    36   8e-04  10
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    52   8e-04  9
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    42   0.001  12
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    38   0.006  9
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    34   0.007  13
dna update 2004. 9.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_17(AC117076|pid:none) Dictyostelium discoideum chromoso...    53   9e-06
AP006840_590(AP006840|pid:none) Symbiobacterium thermophilum IAM...    37   0.51
CP001348_951(CP001348|pid:none) Clostridium cellulolyticum H10, ...    37   0.67
CP000804_4260(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    36   1.1
CP000909_3808(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    36   1.1
CP001337_40(CP001337|pid:none) Chloroflexus aggregans DSM 9485, ...    36   1.1
CP000922_2214(CP000922|pid:none) Anoxybacillus flavithermus WK1,...    36   1.5
BA000028_2404(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    36   1.5
CP000557_578(CP000557|pid:none) Geobacillus thermodenitrificans ...    36   1.5
BA000043_676(BA000043|pid:none) Geobacillus kaustophilus HTA426 ...    36   1.5
protein update 2009. 3.29
PSORT 

 psg: 0.96  gvh: 0.51  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal
	  4.0 %: vacuolar

>> prediction for CHA306 is mit
5' end seq. ID CHA306F
5' end seq. 
>CHA306F.Seq
ACTGTTGGCCTACTGGNTATACATATAACACATATTTTAATTACAAATACACACAACTCC
TAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAACCAGTCATAGATC
AACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAATTACTTTTTACC
ATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAATTTAAATTATAT
TCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCTCGAAGCTTTATG
CCAACTCTTTACAAATGGTGCCTCTGGCAAATTGGATAAACCCGAAGAACTTGGTAAATG
TATTGGTTTAGTATGCTTAAAGACTGGAGAAAATAATGAATTCTACCGTTATATTAAAAC
CACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAATGAATTAATGGC
TGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTCGTACTGATCGTGACCTCTTATA
AACATACAATTTCCTTATTCCAANNNNNNNNNN
Length of 5' end seq. 573
3' end seq. ID CHA306Z
3' end seq. 
>CHA306Z.Seq
NNNNNNNNNNTNTTTAGAATTTNAAGGNTANACTGCNACTAGACANCAACGTNAAGTAGG
GACTGGNTACTTTGATCNAGTTTNTCNAATTATCTCTGGNGGNCNATCTTCNACNTTAGC
TTTAGNAGGNTCNACTNAGGAAGAACNATTTNATGNACATATTGAAAANAAAAANAAAGT
TGCTCATAATAATAATGGNAATAATAAAAACNAA
Length of 3' end seq. 214
Connected seq. ID CHA306P
Connected seq. 
>CHA306P.Seq
ACTGTTGGCCTACTGGNTATACATATAACACATATTTTAATTACAAATACACACAACTCC
TAAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAACCAGTCATAGATC
AACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAGAATTTAATTACTTTTTACC
ATTATTAAAAGAAAAGAAAACAAGTATTGTATCAAATGCAATCAATAATTTAAATTATAT
TCTTACATATCAATCTGAAAGAGAAGAACAAGTTAGCAAAGATATTCTCGAAGCTTTATG
CCAACTCTTTACAAATGGTGCCTCTGGCAAATTGGATAAACCCGAAGAACTTGGTAAATG
TATTGGTTTAGTATGCTTAAAGACTGGAGAAAATAATGAATTCTACCGTTATATTAAAAC
CACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTAAAGATAATGAATTAATGGC
TGCAATCTATGCGCTATCTCAGTCATGTTTCTATTGTCGTACTGATCGTGACCTCTTATA
AACATACAATTTCCTTATTCCAA----------TNTTTAGAATTTNAAGGNTANACTGCN
ACTAGACANCAACGTNAAGTAGGGACTGGNTACTTTGATCNAGTTTNTCNAATTATCTCT
GGNGGNCNATCTTCNACNTTAGCTTTAGNAGGNTCNACTNAGGAAGAACNATTTNATGNA
CATATTGAAAANAAAAANAAAGTTGCTCATAATAATAATGGNAATAATAAAAACNAA
Length of connected seq. 767
Full length Seq ID -
Full length Seq. -
Length of full length seq. -