CHA291
Library CH
(Link to library)
Clone ID CHA291
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11063-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHA291 (CHA291Q) /CSM/CH/CHA2-D/CHA291Q.Seq.d/
XXXXXXXXXXCNNCAATTATTATTAGAGAAACAAAAGGAAGAACAAGTTCAAAAAGATAA
ACCAAAGACTAGAAGATCTAGAGTTTTAGGTAGTACATTAAGTGATAAAGATATTAGAAA
ATTTAAGAATACAAGATCATTGGTAGTGGAAAGAGCATTATTACCATCAAGTTTAAATCT
TGTAATTACAAAATCCAAAGAGATACCAGCAAAACANCAAATGTTAACAGCAATTCGTAA
GAATATATCTAATACTTTCCATAGAATGTATGGTGATTTACTTGATAATAGATATCCAAA
GGTCATCAACAAAGATGAAGATCCATATTTTTCATTTTTACGTTCACGTTTAATGTANGG
TAGAATGTTAAAGAATGNAGAATTATCAATGTCAATGGC
sequence update 2002. 9.10
Translated Amino Acid sequence
---QLLLEKQKEEQVQKDKPKTRRSRVLGSTLSDKDIRKFKNTRSLVVERALLPSSLNLV
ITKSKEIPAKXQMLTAIRKNISNTFHRMYGDLLDNRYPKVINKDEDPYFSFLRSRLMXGR
MLKNXELSMSM


Translated Amino Acid sequence (All Frames)
Frame A:
---xnyy*rnkrknkfkkinqrledlef*vvh*vikilenlriqdhw*wkehyyhqv*il
*lqnpkryqqnxkc*qqfvriylilsiecmviyliidiqrsstkmkihifhfyvhv*cxv
ec*rmxnyqcqw


Frame B:
---xiiiretkgrtsskr*tkd*ki*sfr*yik**ry*ki*eykiigsgksiitikfksc
nykiqrdtsktxnvnsns*eyi*yfp*nvw*ft***iskghqqr*rsiffiftftfnvx*
nvkexriinvng


Frame C:
---QLLLEKQKEEQVQKDKPKTRRSRVLGSTLSDKDIRKFKNTRSLVVERALLPSSLNLV
ITKSKEIPAKXQMLTAIRKNISNTFHRMYGDLLDNRYPKVINKDEDPYFSFLRSRLMXGR
MLKNXELSMSM


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHA291 (CHA291Q) /CSM/CH/CHA2-D/CHA291Q.Seq.d/ 747 0.0
AFO307 (AFO307Q) /CSM/AF/AFO3-A/AFO307Q.Seq.d/ 739 0.0
VHM874 (VHM874Q) /CSM/VH/VHM8-D/VHM874Q.Seq.d/ 38 0.098
VHM272 (VHM272Q) /CSM/VH/VHM2-C/VHM272Q.Seq.d/ 38 0.098
VHL727 (VHL727Q) /CSM/VH/VHL7-B/VHL727Q.Seq.d/ 38 0.098
VHL714 (VHL714Q) /CSM/VH/VHL7-A/VHL714Q.Seq.d/ 38 0.098
SLH313 (SLH313Q) /CSM/SL/SLH3-A/SLH313Q.Seq.d/ 38 0.098
SLF342 (SLF342Q) /CSM/SL/SLF3-B/SLF342Q.Seq.d/ 38 0.098
SLA512 (SLA512Q) /CSM/SL/SLA5-A/SLA512Q.Seq.d/ 38 0.098

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 739 0.0 1
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 739 0.0 1
AL807781|AL807781.6 Human DNA sequence from clone RP11-264P13 on chromosome X. 48 0.001 6
AE017163|AE017163.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 3 of 6 of the complete genome. 50 0.023 1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 40 0.075 9
AC058802|AC058802.1 Homo sapiens chromosome 18 clone RP11-681N6 map 18, WORKING DRAFT SEQUENCE, 18 unordered pieces. 48 0.090 1
AC020554|AC020554.4 Homo sapiens chromosome X clone RP11-476P22, WORKING DRAFT SEQUENCE, 17 unordered pieces. 48 0.090 1
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4. 34 0.18 8
AC121738|AC121738.4 Rattus norvegicus clone CH230-88K16, WORKING DRAFT SEQUENCE, 2 unordered pieces. 40 0.30 3
BZ003048|BZ003048.1 oeh85a08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 46 0.36 1
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117075_78(AC117075|pid:none) Dictyostelium discoideum chromoso... 216 2e-55
AK091591_1(AK091591|pid:none) Homo sapiens cDNA FLJ34272 fis, cl... 36 0.45
BC167197_1(BC167197|pid:none) Synthetic construct Mus musculus c... 36 0.45
(Q32M45) RecName: Full=Anoctamin-4; AltName: Full=Transmembrane ... 36 0.45
(Q8C5H1) RecName: Full=Anoctamin-4; AltName: Full=Transmembrane ... 36 0.45
AK091540_1(AK091540|pid:none) Homo sapiens cDNA FLJ34221 fis, cl... 36 0.45
AP006585_66(AP006585|pid:none) Synechocystis sp. PCC 6803 plasmi... 35 0.59
CP000903_2269(CP000903|pid:none) Bacillus weihenstephanensis KBA... 35 0.59
AK316105_1(AK316105|pid:none) Homo sapiens cDNA, FLJ79004 comple... 34 1.7
(P38811) RecName: Full=Transcription-associated protein 1; AltNa... 33 3.8
protein update 2009. 5.17
PSORT

psg: 0.75 gvh: 0.50 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.24 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
16.0 %: cytoskeletal
12.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CHA291 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHA291Z
3' end seq.
>CHA291Z.Seq
NNNNNNNNNNCNNCAATTATTATTAGAGAAACAAAAGGAAGAACAAGTTCAAAAAGATAA
ACCAAAGACTAGAAGATCTAGAGTTTTAGGTAGTACATTAAGTGATAAAGATATTAGAAA
ATTTAAGAATACAAGATCATTGGTAGTGGAAAGAGCATTATTACCATCAAGTTTAAATCT
TGTAATTACAAAATCCAAAGAGATACCAGCAAAACANCAAATGTTAACAGCAATTCGTAA
GAATATATCTAATACTTTCCATAGAATGTATGGTGATTTACTTGATAATAGATATCCAAA
GGTCATCAACAAAGATGAAGATCCATATTTTTCATTTTTACGTTCACGTTTAATGTANGG
TAGAATGTTAAAGAATGNAGAATTATCAATGTCAATGGC
Length of 3' end seq. 399
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -