>CHA290 (CHA290Q) /CSM/CH/CHA2-D/CHA290Q.Seq.d/
XXXXXXXXXXTGATGAAGGTCCAGTATTAAACAGAAAACAANCCATTGTTATCCNCAANA
ATNAAGATAATAAAGTTGAATCCTNTGATGATTCATCTGATAGTGTTAGACCAAAGGCAA
ATAATTATTGGATCGTTAAAAATTCATGNGGTACCTCATNGGGTATAAAAGGAGACATTT
TAATGACAAAGGATAGCNGNGCNTCAGTG

---DEGPVLNRKQXIVIXXNXDNKVESXDDSSDSVRPKANNYWIVKNSXGTSXGIKGDIL
MTKDSXASV

Frame A:
---DEGPVLNRKQXIVIXXNXDNKVESXDDSSDSVRPKANNYWIVKNSXGTSXGIKGDIL
MTKDSXASV


Frame B:
---mkvqy*tenxpllsxxxkiiklnpxmihlivldqrqiiigslkihxvphxv*ketf*
*qriaxxq


Frame C:
---*rssikqktxhcypqxxr**s*il**fi**c*tkgk*lldr*kfmxylxgykrrhfn
dkg*xxxs

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA290 (CHA290Q) /CSM/CH/CHA2-D/CHA290Q.Seq.d/                        335   2e-91
AFO194 (AFO194Q) /CSM/AF/AFO1-D/AFO194Q.Seq.d/                        305   1e-82
AFM504 (AFM504Q) /CSM/AF/AFM5-A/AFM504Q.Seq.d/                        305   1e-82
AFI644 (AFI644Q) /CSM/AF/AFI6-B/AFI644Q.Seq.d/                        305   1e-82
AFH584 (AFH584Q) /CSM/AF/AFH5-D/AFH584Q.Seq.d/                        305   1e-82
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        303   5e-82
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        303   5e-82
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        303   5e-82
SSL430 (SSL430Q) /CSM/SS/SSL4-B/SSL430Q.Seq.d/                        303   5e-82
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        303   5e-82

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   303   5e-79  1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   280   7e-72  1
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.    58   4e-16  2
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    56   8e-07  2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    62   3e-06  1
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    62   3e-06  1
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50   0.011  1
AC106018|AC106018.1 Homo sapiens chromosome 8 clone CTD-3104K12 map 8, LOW-PASS SEQUENCE SAMPLING.    38   0.028  2
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    48   0.045  1
AL929007|AL929007.6 Zebrafish DNA sequence from clone CH211-235E9 in linkage group 1.    38   0.52   5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...    89   5e-17
(Q94504) RecName: Full=Cysteine proteinase 7;          EC=3.4.22...    43   0.004
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    41   0.014
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...    40   0.024
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...    40   0.024
(Q94503) RecName: Full=Cysteine proteinase 6;          EC=3.4.22...    40   0.024
AF098670_1(AF098670|pid:none) Tethya aurantia silicatein beta mR...    37   0.16
AY515271_1(AY515271|pid:none) Taenia solium cathepsin L-like cys...    37   0.20
AB441815_1(AB441815|pid:none) Taenia solium clp gene for catheps...    37   0.20
AB441816_1(AB441816|pid:none) Taenia saginata clp gene for cathe...    37   0.20

 psg: 0.80  gvh: 0.34  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHA290 is nuc

>CHA290Z.Seq
NNNNNNNNNNTGATGAAGGTCCAGTATTAAACAGAAAACAANCCATTGTTATCCNCAANA
ATNAAGATAATAAAGTTGAATCCTNTGATGATTCATCTGATAGTGTTAGACCAAAGGCAA
ATAATTATTGGATCGTTAAAAATTCATGNGGTACCTCATNGGGTATAAAAGGAGACATTT
TAATGACAAAGGATAGCNGNGCNTCAGTG