>CHA244 (CHA244Q) /CSM/CH/CHA2-B/CHA244Q.Seq.d/
CTGTTGGCCTACTGGTATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATT
AAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAA
AAAAAAAAAACCNTAAAAAAAAAAXXXXXXXXXXATAATGTATTCCCACAACTTTGTAAA
GTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATT
AAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCA
TGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTC
CCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATT
GCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACT
GGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGT
AGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGNACCA
TCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCT
GCCTCAAGTAGTGCTCCATCATCATCAGCTTCNAGTTCAG

vgllvl*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKNXKKK---

---NVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICI
QVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGST
SDSSAASSADSSAASSSPSSSAASSAASSXPSSSAASSSAPSSASSSAPSSASSSAPSSS
ASSS

Frame A:
llaywycsilfifklnintikks*n*ickinl*qklvi*kkkktxkkk---

---imyshnfvkllnvqlislvk*leviqlvlkqdhryhhhiaqlvqsyhqhvitle*fv
fkyqaivpildshvahliqfvfihqllllqplqqlhqlsqlqplqllqvqqlvelqlvvq
llivvllpqpivalpphhhqavllqvplqvxhqvaplqvvlhpllqvalhplpqvvlhhh
qlxvq

Frame B:
cwptgivvfcsysn*isiqlkkvkikfvksicnkn**fkkkkkp*kk---

---*cipttl*sysmsn*fll*nd*r*snly*skttgttttllnlcraiism*srwndly
sstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnwwnynwwfn
f***ccflsr**rcllitikqccfkcrfkxtik*rrfk*csilcfk*rsilclk*csiii
sfxf

Frame C:
vgllvl*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKNXKKK---

---NVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICI
QVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGST
SDSSAASSADSSAASSSPSSSAASSAASSXPSSSAASSSAPSSASSSAPSSASSSAPSSS
ASSS

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN316 (VFN316Q) /CSM/VF/VFN3-A/VFN316Q.Seq.d/                       1070   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                       1070   0.0
SLG750 (SLG750Q) /CSM/SL/SLG7-C/SLG750Q.Seq.d/                       1070   0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/                       1070   0.0
SLE302 (SLE302Q) /CSM/SL/SLE3-A/SLE302Q.Seq.d/                       1070   0.0
SLE241 (SLE241Q) /CSM/SL/SLE2-B/SLE241Q.Seq.d/                       1070   0.0
SLC720 (SLC720Q) /CSM/SL/SLC7-A/SLC720Q.Seq.d/                       1070   0.0
SLC119 (SLC119Q) /CSM/SL/SLC1-A/SLC119Q.Seq.d/                       1070   0.0
SLB747 (SLB747Q) /CSM/SL/SLB7-B/SLB747Q.Seq.d/                       1070   0.0
SLB706 (SLB706Q) /CSM/SL/SLB7-A/SLB706Q.Seq.d/                       1070   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.  1070   0.0    2
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read.   190   2e-44  1
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    88   3e-29  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   6e-27  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    88   2e-13  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   5e-11  1
AF279135|AF279135.1 Dictyostelium discoideum spore coat structural protein SP65 (cotE) gene, complete cds.    64   2e-06  2
CN187496|CN187496.1 UCRCS05_0004I21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004I21, mRNA sequence.    34   0.54   3
AC024960|AC024960.2 Homo sapiens chromosome 18 clone RP11-431C11 map 18, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   0.71   5
BX571707|BX571707.13 Zebrafish DNA sequence from clone DKEY-93K4 in linkage group 14.    46   0.76   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       155   1e-36
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   155   1e-36
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    49   1e-04
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    44   0.004
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    44   0.004
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    42   0.022
T27318(T27318)hypothetical protein Y69H2.3a - Caenorhabditis ele...    37   0.42
Z98877_12(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com...    37   0.42
T27319(T27319)hypothetical protein Y69H2.3b - Caenorhabditis ele...    37   0.42
Z98877_10(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com...    37   0.42

 psg: 0.16  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.15
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHA244 is nuc

>CHA244F.Seq
CTGTTGGCCTACTGGTATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATT
AAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAA
AAAAAAAAAACCNTAAAAAAAAAANNNNNNNNNN

>CHA244Z.Seq
NNNNNNNNNNATAATGTATTCCCACAACTTTGTAAAGTTACTCAATGTCCAACTGATTTC
TCTTGTAAAATGATTAGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCA
CCACATTGCTCAACTTGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGT
ATTCAAGTACCAAGCAATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATT
TGTATTCATCCATCAACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCA
ACTACAACCTCTGCAACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCA
ACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCA
AGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGNACCATCAAGTAGCGCCGCTTCAAGTAGT
GCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCA
TCAGCTTCNAGTTCAG

>CHA244P.Seq
CTGTTGGCCTACTGGTATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATT
AAAAAAAGTTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAA
AAAAAAAAAACCNTAAAAAAAAAA----------ATAATGTATTCCCACAACTTTGTAAA
GTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTTGTATT
AAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCATCAGCA
TGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTAGATTC
CCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAACCATT
GCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAACAACT
GGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCGATAGT
AGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTGNACCA
TCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCATCCTCT
GCCTCAAGTAGTGCTCCATCATCATCAGCTTCNAGTTCAG