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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHA236
Library CH
(Link to library)
Clone ID CHA236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15870-1|Contig-U16170-1
Original site URL
Representative seq. ID CHA236P
(Link to Original site)
Representative DNA sequence 
>CHA236 (CHA236Q) /CSM/CH/CHA2-B/CHA236Q.Seq.d/
GGCCTACTGGAAAAAAAAAGTTTTTATATGGTGTGACATTAAGGCAATAATAATAATAAT
AGAATTCAATCACAACTACAAAAAAAAACAAAAAACACATTGTNTAAATATTTAAAATNG
GAGAATCTTCAATTTACAAACAATAATTCAAAACTCATATAAATAAATATAAATATATAA
AATCATACTTACATATAAAATAACACANTAAAATGGGTCAATTACTTAGTTTTATCAATG
GAAATGATCACNCTGAACAAATTTTCATAGATTTCGAACATGCTCAACCATCAGACGACG
AAAGANAACTTCNTAAAACAGTTAATGAAGTTTTAATTAGAGGTCCAGCTNTCATCGATA
AACTTTTANCCTATGCAGGTTGTAATGAATTCATTAGAAGAGCAATTACCAATCCAGGTC
CANAAACTGAANATGCTGCATGGGAAGCTGTNCTCCCATCAXXXXXXXXXXATCTATAAA
TTCTATCCACGTCATAAAAAATATAATATTCANAAATATGTTTCACCAGCAGTAAATAGA
TTCTTTGGTAATGCTACACAAACTTTCCCAGATGCTCTTAAACTCTCTTTAACAGAATTA
AAGGAAGTTGATGCTGACCTTGTTAAAAAGATTGCAGATGAAGATAAGAAATCATGGTCT
TCAGGTATTAAAAAATCAAAAGAAACTCAAATTGATGATGGTCGTTATTCAGACTCTGAT
GAATCTTCATCTGAAGATGAAGAATCTGAAGAAGAACCAAAGAAAGAGGTTGTTAAAAGA
GTTGTTAAAAAAGCTGCTGCTAAACCAGCTCCAGTTAAACCAGCTCCAAAACAATCTAAA
AAGAAAGCTGCTGCTAAGAAACCAAAAGCTGATGAAAAGTCTGAAGAAAAAGCTGATGAA
AAAGAAGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAAAAAGAAGAA
GAAAAGGAAGAAGAAAAGGAAGAAAAAGAAGAAAAGGAAACTAAAGCTGATGATAAAGAA
GAAAAAGAAGAAAAAGAAGCTAAAGC
sequence update 2002.10.25
Translated Amino Acid sequence 
ptgkkkflygvtlrq*****nsitttkknkkhiv*ifkxgessiykq*fkthinkykyik
sylhik*HXKMGQLLSFINGNDHXEQIFIDFEHAQPSDDERXLXKTVNEVLIRGPAXIDK
LLXYAGCNEFIRRAITNPGPXTEXAAWEAVLPS---

---IYKFYPRHKKYNIXKYVSPAVNRFFGNATQTFPDALKLSLTELKEVDADLVKKIADE
DKKSWSSGIKKSKETQIDDGRYSDSDESSSEDEESEEEPKKEVVKRVVKKAAAKPAPVKP
APKQSKKKAAAKKPKADEKSEEKADEKEEKEEKEEKEEEKEEEKEEEKEEEKEEKEEKET
KADDKEEKEEKEAK
Translated Amino Acid sequence (All Frames) 
Frame A:
gllekksfymv*h*gnnnnnriqsqlqkktkntlxkylkxenlqftnnnskli*inini*
nhtyi*nntxkwvnylvlsmemitlnkfs*isnmlnhqttkxnfxkqlmkf*levqlssi
nfxpmqvvmnsleeqlpiqvxklxmlhgklxsh---

---IYKFYPRHKKYNIXKYVSPAVNRFFGNATQTFPDALKLSLTELKEVDADLVKKIADE
DKKSWSSGIKKSKETQIDDGRYSDSDESSSEDEESEEEPKKEVVKRVVKKAAAKPAPVKP
APKQSKKKAAAKKPKADEKSEEKADEKEEKEEKEEKEEEKEEEKEEEKEEEKEEKEEKET
KADDKEEKEEKEAK

Frame B:
aywkkkvfiwcdikaiiiiiefnhnykkkqkthcxni*nxrifnlqtiiqnsyk*i*iyk
iiltykitx*ngsit*fyqwk*sx*tnfhrfrtcstirrrkxts*ns**sfn*rssxhr*
tfxlcrl**ih*ksnyqsrsxn*xccmgscxpi---

---sinsihvikniifxnmfhqq*idslvmlhklsqmllnsl*qn*rklmltllkrlqmk
irnhglqvlknqkklklmmvviqtlmnlhlkmknlkknqrkrllkellkklllnqlqlnq
lqnnlkrklllrnqklmkslkkklmkkkkkkkkkkkkkkkkkkkkkkrkkkrkkkkkrkl
klmikkkkkkkklk

Frame C:
ptgkkkflygvtlrq*****nsitttkknkkhiv*ifkxgessiykq*fkthinkykyik
sylhik*HXKMGQLLSFINGNDHXEQIFIDFEHAQPSDDERXLXKTVNEVLIRGPAXIDK
LLXYAGCNEFIRRAITNPGPXTEXAAWEAVLPS---

---l*ilsts*ki*ysxicftssk*ilw*cytnfprcs*tlfnrikgs*c*pc*kdcr*r
*eimvfry*kikrnsn**wslfrl**ifi*r*ri*rrtkergc*ksc*kscc*tsss*ts
skti*kescc*etks**kv*rks**krrkrrkrrkrrrkrrrkrrrkgrrkgrkrrkgn*
s***rrkrrkrs*s
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA236 (CHA236Q) /CSM/CH/CHA2-B/CHA236Q.Seq.d/                       1116   0.0
SHC278 (SHC278Q) /CSM/SH/SHC2-D/SHC278Q.Seq.d/                        714   0.0
SFH240 (SFH240Q) /CSM/SF/SFH2-B/SFH240Q.Seq.d/                        714   0.0
SFF318 (SFF318Q) /CSM/SF/SFF3-A/SFF318Q.Seq.d/                        714   0.0
SFD643 (SFD643Q) /CSM/SF/SFD6-B/SFD643Q.Seq.d/                        714   0.0
CFK485 (CFK485Q) /CSM/CF/CFK4-D/CFK485Q.Seq.d/                        714   0.0
CFF640 (CFF640Q) /CSM/CF/CFF6-B/CFF640Q.Seq.d/                        714   0.0
CFB212 (CFB212Q) /CSM/CF/CFB2-A/CFB212Q.Seq.d/                        714   0.0
AFL236 (AFL236Q) /CSM/AF/AFL2-B/AFL236Q.Seq.d/                        714   0.0
AFJ266 (AFJ266Q) /CSM/AF/AFJ2-C/AFJ266Q.Seq.d/                        714   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.   220   e-141  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    42   5e-05  4
AF482381|AF482381.1 Dictyostelium discoideum ABC transporter AbcG2 (abcG2) and ABC transporter AbcG18 (abcG18) genes, complete cds.    36   3e-04  5
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    36   0.001  7
AL096782|AL096782.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P8.    38   0.003  6
BX842696|BX842696.13 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.004  5
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    36   0.007  9
AC116955|AC116955.2 Dictyostelium discoideum chromosome 2 map 5455881-5481449 strain AX4, complete sequence.    38   0.009  3
BX294113|BX294113.7 Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24.    38   0.010  8
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    34   0.012  10
dna update 2004. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T2H0) RecName: Full=Protein FAM49 homolog;  &AC115607_2(AC115...   155   2e-36
(P54696) RecName: Full=Myosin IH heavy chain;                         138   3e-31
BT046597_1(BT046597|pid:none) Salmo salar clone ssal-eve-540-327...    61   7e-08
BT056500_1(BT056500|pid:none) Salmo salar clone ssal-eve-562-166...    57   1e-06
BT056927_1(BT056927|pid:none) Salmo salar clone ssal-eve-556-188...    57   1e-06
BC059337_1(BC059337|pid:none) Xenopus laevis hypothetical protei...    56   2e-06
BC135124_1(BC135124|pid:none) Xenopus tropicalis hypothetical pr...    56   2e-06
BT045029_1(BT045029|pid:none) Salmo salar clone ssal-rgf-510-107...    55   3e-06
BC066542_1(BC066542|pid:none) Danio rerio zgc:76981, mRNA (cDNA ...    54   9e-06
CT583667_6(CT583667|pid:none) Zebrafish DNA sequence from clone ...    54   1e-05
protein update 2009. 3.29
PSORT 

 psg: 0.89  gvh: 0.47  alm: 0.50  top: 0.17  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.14  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHA236 is cyt
5' end seq. ID CHA236F
5' end seq. 
>CHA236F.Seq
GGCCTACTGGAAAAAAAAAGTTTTTATATGGTGTGACATTAAGGCAATAATAATAATAAT
AGAATTCAATCACAACTACAAAAAAAAACAAAAAACACATTGTNTAAATATTTAAAATNG
GAGAATCTTCAATTTACAAACAATAATTCAAAACTCATATAAATAAATATAAATATATAA
AATCATACTTACATATAAAATAACACANTAAAATGGGTCAATTACTTAGTTTTATCAATG
GAAATGATCACNCTGAACAAATTTTCATAGATTTCGAACATGCTCAACCATCAGACGACG
AAAGANAACTTCNTAAAACAGTTAATGAAGTTTTAATTAGAGGTCCAGCTNTCATCGATA
AACTTTTANCCTATGCAGGTTGTAATGAATTCATTAGAAGAGCAATTACCAATCCAGGTC
CANAAACTGAANATGCTGCATGGGAAGCTGTNCTCCCATCANNNNNNNNNN
Length of 5' end seq. 471
3' end seq. ID CHA236Z
3' end seq. 
>CHA236Z.Seq
NNNNNNNNNNATCTATAAATTCTATCCACGTCATAAAAAATATAATATTCANAAATATGT
TTCACCAGCAGTAAATAGATTCTTTGGTAATGCTACACAAACTTTCCCAGATGCTCTTAA
ACTCTCTTTAACAGAATTAAAGGAAGTTGATGCTGACCTTGTTAAAAAGATTGCAGATGA
AGATAAGAAATCATGGTCTTCAGGTATTAAAAAATCAAAAGAAACTCAAATTGATGATGG
TCGTTATTCAGACTCTGATGAATCTTCATCTGAAGATGAAGAATCTGAAGAAGAACCAAA
GAAAGAGGTTGTTAAAAGAGTTGTTAAAAAAGCTGCTGCTAAACCAGCTCCAGTTAAACC
AGCTCCAAAACAATCTAAAAAGAAAGCTGCTGCTAAGAAACCAAAAGCTGATGAAAAGTC
TGAAGAAAAAGCTGATGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAGAAAA
AGAAGAAGAAAAAGAAGAAGAAAAGGAAGAAGAAAAGGAAGAAAAAGAAGAAAAGGAAAC
TAAAGCTGATGATAAAGAAGAAAAAGAAGAAAAAGAAGCTAAAGC
Length of 3' end seq. 585
Connected seq. ID CHA236P
Connected seq. 
>CHA236P.Seq
GGCCTACTGGAAAAAAAAAGTTTTTATATGGTGTGACATTAAGGCAATAATAATAATAAT
AGAATTCAATCACAACTACAAAAAAAAACAAAAAACACATTGTNTAAATATTTAAAATNG
GAGAATCTTCAATTTACAAACAATAATTCAAAACTCATATAAATAAATATAAATATATAA
AATCATACTTACATATAAAATAACACANTAAAATGGGTCAATTACTTAGTTTTATCAATG
GAAATGATCACNCTGAACAAATTTTCATAGATTTCGAACATGCTCAACCATCAGACGACG
AAAGANAACTTCNTAAAACAGTTAATGAAGTTTTAATTAGAGGTCCAGCTNTCATCGATA
AACTTTTANCCTATGCAGGTTGTAATGAATTCATTAGAAGAGCAATTACCAATCCAGGTC
CANAAACTGAANATGCTGCATGGGAAGCTGTNCTCCCATCA----------ATCTATAAA
TTCTATCCACGTCATAAAAAATATAATATTCANAAATATGTTTCACCAGCAGTAAATAGA
TTCTTTGGTAATGCTACACAAACTTTCCCAGATGCTCTTAAACTCTCTTTAACAGAATTA
AAGGAAGTTGATGCTGACCTTGTTAAAAAGATTGCAGATGAAGATAAGAAATCATGGTCT
TCAGGTATTAAAAAATCAAAAGAAACTCAAATTGATGATGGTCGTTATTCAGACTCTGAT
GAATCTTCATCTGAAGATGAAGAATCTGAAGAAGAACCAAAGAAAGAGGTTGTTAAAAGA
GTTGTTAAAAAAGCTGCTGCTAAACCAGCTCCAGTTAAACCAGCTCCAAAACAATCTAAA
AAGAAAGCTGCTGCTAAGAAACCAAAAGCTGATGAAAAGTCTGAAGAAAAAGCTGATGAA
AAAGAAGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAAAAAGAAGAA
GAAAAGGAAGAAGAAAAGGAAGAAAAAGAAGAAAAGGAAACTAAAGCTGATGATAAAGAA
GAAAAAGAAGAAAAAGAAGCTAAAGC
Length of connected seq. 1036
Full length Seq ID -
Full length Seq. -
Length of full length seq. -