>AFF249 (AFF249Q) /CSM/AF/AFF2-C/AFF249Q.Seq.d/
ATTTTTTATACAACCAAAACTATATAAATAAATATATATAAATATAATTACAATTTAAAA
TGTACTCACCAGAAGATTTAGAATATAGAGAACAACAACGTTTAAGTAAAGCATTACAAG
GTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGCACCAGTTGTAACAGGTAAACCAC
AAACACATAGTGCACCAGTTAATAGTTCATTTGCATCAATTTCAATTTCAGATAAGCACC
ACGAATCACCATCAACAACAACATCATCACCATCAACATCATCAGGTGTTGATAATAGTT
CAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAAATCACAAGAAGCACACCGTTTGA
AAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAACCGCTCATATTCCAGCATATACTT
CATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAA
AGGAAACCAGTAGTAACAACCTCTTXXXXXXXXXXCTCTTGCAATATCAATCANCAGTTA
GAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACG
TTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGG
GTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCNCCACCAGTCTCTA
GTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCATTCT
CAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCNCAATCGCTACTACCC
AACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGA
AAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAA
ACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTG
GTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATAAAA

flynqnyinkyi*i*LQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQ
THSAPVNSSFASISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAHRLK
KMGLSTEEDESTAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNL---

---LLQYQSXVRVASSTSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTA
TSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLXIATTQQFLDRIVL
SAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNE
LVKDTAHENNK

Frame A:
ifyttkti*iniykynynlkcthqki*niennnv*vkhykvn*vvqaqenhghql*qvnh
khivhqlivhlhqfqfqisttnhhqqqhhhhqhhqvliivqsiqvqslriklnhkkhtv*
krwvfqlkkmnqplifqhilh*ihhphppsqrviaikalqrkpvvtts---

---LLQYQSXVRVASSTSSENLVDSASIMNNVDSHTSEEKMKQEAKRLERWGLKINSPTA
TSPSTTSPPVSSTTPVAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLXIATTQQFLDRIVL
SAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNE
LVKDTAHENNK

Frame B:
ffiqpklyk*iyiniiti*nvltrrfri*rtttfk*sitr*irwcklkkimgtscnr*tt
nt*cts**ficinfnfr*apritinnniitiniirc***fnlsrcnr*g*s*itrstpfe
kdgsfn*rr*inrsyssiyfikfiilihhlke**qskpckgnq**qpl---

---scninxqle*paqhhlri*sivlpl*ttliliplkrk*skrqrd*kdgv*rlthqll
phqalpxhqslvplrlhq*lqpnnlyhnlhsqlvlpslsikviaisqsllpnnslivsfs
llnplnksfkrkplivilsslfswi**rnlqtlv*lslqlpqclsislkmlvnslvlsmn
*lktlltkiik

Frame C:
flynqnyinkyi*i*LQFKMYSPEDLEYREQQRLSKALQGKLGGASSRKSWAPVVTGKPQ
THSAPVNSSFASISISDKHHESPSTTTSSPSTSSGVDNSSIYPGAIVEDKVKSQEAHRLK
KMGLSTEEDESTAHIPAYTSLNSSSSSTISKSNSNQSLAKETSSNNL---

---laisixs*ssqlnii*efsr*cfhyeqr*fsyl*reneargkeirkmgfkd*ltncy
ltkhylxtsl*yhsgctsdsnrticttisilnwccrlcqsks*qsxnryyptip*syrsl
c*ir*tnhskenl*s*ychlyshgfskgicklwydslfnypnvfrylskcw*trwccq*i
s*rhcsrk**

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFF249 (AFF249Q) /CSM/AF/AFF2-C/AFF249Q.Seq.d/                       1501   0.0
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                       1102   0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                       1102   0.0
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                       1102   0.0
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                       1102   0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/                       1096   0.0
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/                       1094   0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/                       1090   0.0
CHD103 (CHD103Q) /CSM/CH/CHD1-A/CHD103Q.Seq.d/                        987   0.0
VFL163 (VFL163Q) /CSM/VF/VFL1-C/VFL163Q.Seq.d/                        961   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.  1102   0.0    4
AC122688|AC122688.5 Homo sapiens 12 BAC RP11-158L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46   1.1    1
AP006101|AP006101.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181.    36   1.4    11
BX294000|BX294000.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-67B10.    36   1.8    10
AL161564|AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64.    36   2.8    5
AP003189|AP003189.2 Clostridium perfringens str. 13 DNA, complete genome, section 5/10.    36   3.4    7
BD193635|BD193635.1 Enterococcus faecialis polynucleotides and polypeptides.    38   4.2    2
AC019295|AC019295.3 Homo sapiens clone RP11-24O11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   4.3    1
AC140082|AC140082.2 Rattus norvegicus clone CH230-223J12 strain Brown Norway, WORKING DRAFT SEQUENCE, 8 ordered pieces.    44   4.3    1
AC010259|AC010259.7 Homo sapiens chromosome 5 clone CTC-454M9, complete sequence.    44   4.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   503   e-141
FM992688_1247(FM992688|pid:none) Candida dubliniensis CD36 chrom...    35   5.6
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl...    35   5.6

 psg: 0.75  gvh: 0.47  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AFF249 is cyt

>AFF249F.Seq
ATTTTTTATACAACCAAAACTATATAAATAAATATATATAAATATAATTACAATTTAAAA
TGTACTCACCAGAAGATTTAGAATATAGAGAACAACAACGTTTAAGTAAAGCATTACAAG
GTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGCACCAGTTGTAACAGGTAAACCAC
AAACACATAGTGCACCAGTTAATAGTTCATTTGCATCAATTTCAATTTCAGATAAGCACC
ACGAATCACCATCAACAACAACATCATCACCATCAACATCATCAGGTGTTGATAATAGTT
CAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAAATCACAAGAAGCACACCGTTTGA
AAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAACCGCTCATATTCCAGCATATACTT
CATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAA
AGGAAACCAGTAGTAACAACCTCTT----------

>AFF249Z.Seq
----------CTCTTGCAATATCAATCANCAGTTAGAGTAGCCAGCTCAACATCATCTGA
GAATTTAGTCGATAGTGCTTCCATTATGAACAACGTTGATTCTCATACCTCTGAAGAGAA
AATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGGGTTTAAAGATTAACTCACCAACTGC
TACCTCACCAAGCACTACCTCNCCACCAGTCTCTAGTACCACTCCGGTTGCACCAGTGAC
TCCAACCGAACAATCTGTACCACAATCTCCATTCTCAACTGGTGCTGCCGTCTCTGTCAA
TCAAAGTCATAGCAATCTCNCAATCGCTACTACCCAACAATTCCTTGATCGTATCGTTCT
CTCTGCTAAATCCGTTAAACAAATCATTCAAAAGAAAACCTCTAATCGTGATATTGTCAT
CTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAAC
TACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGA
ATTAGTTAAAGACACTGCTCACGAAAATAATAAAA

>AFF249P.Seq
ATTTTTTATACAACCAAAACTATATAAATAAATATATATAAATATAATTACAATTTAAAA
TGTACTCACCAGAAGATTTAGAATATAGAGAACAACAACGTTTAAGTAAAGCATTACAAG
GTAAATTAGGTGGTGCAAGCTCAAGAAAATCATGGGCACCAGTTGTAACAGGTAAACCAC
AAACACATAGTGCACCAGTTAATAGTTCATTTGCATCAATTTCAATTTCAGATAAGCACC
ACGAATCACCATCAACAACAACATCATCACCATCAACATCATCAGGTGTTGATAATAGTT
CAATCTATCCAGGTGCAATCGTTGAGGATAAAGTTAAATCACAAGAAGCACACCGTTTGA
AAAAGATGGGTCTTTCAACTGAAGAAGATGAATCAACCGCTCATATTCCAGCATATACTT
CATTAAATTCATCATCCTCATCCACCATCTCAAAGAGTAATAGCAATCAAAGCCTTGCAA
AGGAAACCAGTAGTAACAACCTCTT----------CTCTTGCAATATCAATCANCAGTTA
GAGTAGCCAGCTCAACATCATCTGAGAATTTAGTCGATAGTGCTTCCATTATGAACAACG
TTGATTCTCATACCTCTGAAGAGAAAATGAAGCAAGAGGCAAAGAGATTAGAAAGATGGG
GTTTAAAGATTAACTCACCAACTGCTACCTCACCAAGCACTACCTCNCCACCAGTCTCTA
GTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCATTCT
CAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCNCAATCGCTACTACCC
AACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGA
AAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAA
ACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTG
GTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATAAAA