>CHA182 (CHA182Q) /CSM/CH/CHA1-D/CHA182Q.Seq.d/
CACTGTTGGCCTACTGGTAATACCATTAAAATAATTTTTCTACGTCCAAAAATAATGAGC
GATAACAATTTAGAAACACCAACTAATGTTTCAGAGGAAACTAAAGTCGAAGAAGTTAAA
GTAGAAAATACTTTACCAATTGAAGACGAAAAACTTGAACAACCATCAGAAGAAATTAAA
GTTGAAGCCACATCAGTCTCTGTTGAAGAAACCAAACCAACTGAAGAGGTAAAACCAGTC
GAAGAAGTAAAACCAATCGAAGAAGTAAAACCAGTTGAAGAAGTTAAACCAGTTGAAGAA
GTCAAACCAGTCGAAGAAGTCAAACCAGTTGAAGAAGTCAAACCAACTGAAGAAGTAAAA
CCAGTCGAAGAAGTCAAACAAGACGAAGAAGTCAANCCCAACTGAGGAAGTTAAACAAGT
CGAAGAAGTCAAACAAGTCGAANAAGTTAAGCAAGTCGAANAAGTTCAAACCANCTGANG
AAGTCANACCNGTTGAAGAAGTTTAAACCAGTTGAAGAAGTCAAAXXXXXXXXXXAGATT
TTAATGGCAGATCCAAATATTGCTCCATTATCAGCTTACTTGGGAATTTGTGGTATGCCT
GGAGTTACTGCATATTATGGAACTGTTTTAATTGGTAAACCAAAGAAAGGTGAAACATTA
GTTGTTAATGCAGCAGCTGGTGTAGTTGGTACCACCGTTGGACAAATTGGTAAAATCCTA
GGTCTAAGAGTTGTAGGTATTTGTGGTTCTGATGAAAAGGCAAAATCACTTATTAATGAT
TTCCATTTTGACTCTGTATTAAATTACCATAGTCCAACATATGCTGAAGATTTAAAAAAA
GCATGCCCAAATGGTATTGATATCTTTTATGAAAATGTTGGTGGTGAAGTATCTGATCCA
ATTCTCTTACTTTTGAATGTTCATGCAAGAGTTGCTTGTTGTGGCGCCATATCCGTTTAC
AATAAAAAAGTAACAGATGATATTGGACAAAGAGCCACAACACATAGTGTTTGANNAAAG
AATTACAANGCAAGGTTTCTTAGTATTTGATTATTCTGATGAAGAGTTATANAGATGCTT
TCCNACATTTATCAAAA

hcwptgntikiiflrpkimsdnnletptnvseetkveevkventlpiedekleqpseeik
veatsvsveetkpteevkpveevkpieevkpveevkpveevkpveevkpveevkpteevk
pveevkqdeevxpn*gs*tsrrsqtsrxs*ASRXSSNXLXKSXXLKKFKPVEEVK---

---ILMADPNIAPLSAYLGICGMPGVTAYYGTVLIGKPKKGETLVVNAAAGVVGTTVGQI
GKILGLRVVGICGSDEKAKSLINDFHFDSVLNYHSPTYAEDLKKACPNGIDIFYENVGGE
VSDPILLLLNVHARVACCGAISVYNKKVTDDIGQRATTHSV*xknyxarflsi*lf**rv
ixmlsxiyq

Frame A:
hcwptgntikiiflrpkimsdnnletptnvseetkveevkventlpiedekleqpseeik
veatsvsveetkpteevkpveevkpieevkpveevkpveevkpveevkpveevkpteevk
pveevkqdeevxpn*gs*tsrrsqtsrxs*ASRXSSNXLXKSXXLKKFKPVEEVK---

---rf*wqiqillhyqltwefvvclellhimelf*lvnqrkvkh*llmqqlv*lvppldk
lvks*v*el*vfvvlmkrqnhllmisiltly*itivqhmlki*kkhaqmvlisfmkmlvv
kyliqfsyf*mfmqellvvapypftikk*qmildkepqhivfxxritxqgflvfdysdee
lxrcfptfik

Frame B:
tvgllviplk*ffyvqk**aiti*khqlmfqrklkskklk*kilyqlktknlnnhqkklk
lkphqsllkkpnqlkr*nqskk*nqskk*nqlkklnqlkksnqskksnqlkksnqlkk*n
qskksnktkksxpteevkqveevkqvexvkqvexvqtx*xsxtx*rslnqlkks---

---dfngrskycsiisllgnlwyawsycilwncfnw*tker*nisc*csswcswyhrwtn
w*nprskscrylwf**kgkity**fpf*lciklp*snic*rfkksmpkwy*yll*kcww*
si*snsltfecsckscllwrhirlq*ksnr*ywtkshnt*clxkelqxkvs*yliilmks
yxdafxhlsk

Frame C:
llayw*yh*nnfstsknner*qfrntn*cfrgn*srrs*srkyftn*rrkt*ttirrn*s
*shislc*rnqtn*rgktsrrsktnrrskts*rs*ts*rsqtsrrsqts*rsqtn*rskt
srrsqtrrrsqxqlrklnkskksnksxklsksxkfkpxxevxpveev*ts*rsq---

---ILMADPNIAPLSAYLGICGMPGVTAYYGTVLIGKPKKGETLVVNAAAGVVGTTVGQI
GKILGLRVVGICGSDEKAKSLINDFHFDSVLNYHSPTYAEDLKKACPNGIDIFYENVGGE
VSDPILLLLNVHARVACCGAISVYNKKVTDDIGQRATTHSV*xknyxarflsi*lf**rv
ixmlsxiyq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA182 (CHA182Q) /CSM/CH/CHA1-D/CHA182Q.Seq.d/                       2002   0.0
CHC837 (CHC837Q) /CSM/CH/CHC8-B/CHC837Q.Seq.d/                        995   0.0
CHC248 (CHC248Q) /CSM/CH/CHC2-B/CHC248Q.Seq.d/                        995   0.0
CFH780 (CFH780Q) /CSM/CF/CFH7-D/CFH780Q.Seq.d/                        995   0.0
CFG494 (CFG494Q) /CSM/CF/CFG4-D/CFG494Q.Seq.d/                        995   0.0
CFE816 (CFE816Q) /CSM/CF/CFE8-A/CFE816Q.Seq.d/                        995   0.0
CFE683 (CFE683Q) /CSM/CF/CFE6-D/CFE683Q.Seq.d/                        995   0.0
CFH677 (CFH677Q) /CSM/CF/CFH6-D/CFH677Q.Seq.d/                        987   0.0
CFA747 (CFA747Q) /CSM/CF/CFA7-B/CFA747Q.Seq.d/                        987   0.0
CFK496 (CFK496Q) /CSM/CF/CFK4-D/CFK496Q.Seq.d/                        981   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.   583   0.0    9
Z37981|Z37981.1 D.discoideum gene for protein kinase.              40   4e-15  8
AZ163905|AZ163905.1 SP_0074_B2_B08_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=74 Col=16 Row=D, DNA sequence.    42   2e-10  6
AZ672575|AZ672575.1 ENTLT12TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42   1e-08  5
BW529286|BW529286.1 Ciona savignyi cDNA, clone:cslv010m05, 5'end, single read.    44   0.002  3
BW559326|BW559326.1 Ciona savignyi cDNA, clone:cslv010m05, 3'end, single read.    44   0.002  3
AC150279|AC150279.1 Pan troglodytes chromosome Y clone CH251-100M4, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42   0.020  6
CF827552|CF827552.1 EST704934 Coccidioides posadasii saprobic phase cDNA library, 2 to 4 kb Coccidioides posadasii cDNA clone CIDB930 3' end, mRNA sequence.    38   0.026  5
CF821784|CF821784.1 EST699166 Coccidioides posadasii saprobic phase cDNA library, 2 to 4 kb Coccidioides posadasii cDNA clone CIDAC11 3' end, mRNA sequence.    38   0.026  5
CR382127|CR382127.1 Yarrowia lipolytica chromosome A of strain CLIB99 of Yarrowia  lipolytica.    28   0.027  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115606_11(AC115606|pid:none) Dictyostelium discoideum chromoso...   207   4e-58
BA000028_2947(BA000028|pid:none) Oceanobacillus iheyensis HTE831...   145   1e-33
CP000323_859(CP000323|pid:none) Psychrobacter cryohalolentis K5,...   140   6e-32
CP000155_6518(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   136   1e-30
CP000634_671(CP000634|pid:none) Agrobacterium vitis S4 chromosom...   133   1e-29
CP000323_1009(CP000323|pid:none) Psychrobacter cryohalolentis K5...   131   5e-29
CP000431_5896(CP000431|pid:none) Rhodococcus jostii RHA1, comple...   131   5e-29
CP000758_1058(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918...   130   1e-28
CP000094_1806(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...   126   3e-28
CP001022_791(CP001022|pid:none) Exiguobacterium sibiricum 255-15...   127   7e-28

 psg: 0.55  gvh: 0.53  alm: 0.31  top: 0.83  tms: 0.07  mit: 0.41  mip: 0.02
 nuc: 0.03  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CHA182 is nuc

>CHA182F.Seq
CACTGTTGGCCTACTGGTAATACCATTAAAATAATTTTTCTACGTCCAAAAATAATGAGC
GATAACAATTTAGAAACACCAACTAATGTTTCAGAGGAAACTAAAGTCGAAGAAGTTAAA
GTAGAAAATACTTTACCAATTGAAGACGAAAAACTTGAACAACCATCAGAAGAAATTAAA
GTTGAAGCCACATCAGTCTCTGTTGAAGAAACCAAACCAACTGAAGAGGTAAAACCAGTC
GAAGAAGTAAAACCAATCGAAGAAGTAAAACCAGTTGAAGAAGTTAAACCAGTTGAAGAA
GTCAAACCAGTCGAAGAAGTCAAACCAGTTGAAGAAGTCAAACCAACTGAAGAAGTAAAA
CCAGTCGAAGAAGTCAAACAAGACGAAGAAGTCAANCCCAACTGAGGAAGTTAAACAAGT
CGAAGAAGTCAAACAAGTCGAANAAGTTAAGCAAGTCGAANAAGTTCAAACCANCTGANG
AAGTCANACCNGTTGAAGAAGTTTAAACCAGTTGAAGAAGTCAAANNNNNNNNNN

>CHA182Z.Seq
NNNNNNNNNNAGATTTTAATGGCAGATCCAAATATTGCTCCATTATCAGCTTACTTGGGA
ATTTGTGGTATGCCTGGAGTTACTGCATATTATGGAACTGTTTTAATTGGTAAACCAAAG
AAAGGTGAAACATTAGTTGTTAATGCAGCAGCTGGTGTAGTTGGTACCACCGTTGGACAA
ATTGGTAAAATCCTAGGTCTAAGAGTTGTAGGTATTTGTGGTTCTGATGAAAAGGCAAAA
TCACTTATTAATGATTTCCATTTTGACTCTGTATTAAATTACCATAGTCCAACATATGCT
GAAGATTTAAAAAAAGCATGCCCAAATGGTATTGATATCTTTTATGAAAATGTTGGTGGT
GAAGTATCTGATCCAATTCTCTTACTTTTGAATGTTCATGCAAGAGTTGCTTGTTGTGGC
GCCATATCCGTTTACAATAAAAAAGTAACAGATGATATTGGACAAAGAGCCACAACACAT
AGTGTTTGANNAAAGAATTACAANGCAAGGTTTCTTAGTATTTGATTATTCTGATGAAGA
GTTATANAGATGCTTTCCNACATTTATCAAAA

>CHA182P.Seq
CACTGTTGGCCTACTGGTAATACCATTAAAATAATTTTTCTACGTCCAAAAATAATGAGC
GATAACAATTTAGAAACACCAACTAATGTTTCAGAGGAAACTAAAGTCGAAGAAGTTAAA
GTAGAAAATACTTTACCAATTGAAGACGAAAAACTTGAACAACCATCAGAAGAAATTAAA
GTTGAAGCCACATCAGTCTCTGTTGAAGAAACCAAACCAACTGAAGAGGTAAAACCAGTC
GAAGAAGTAAAACCAATCGAAGAAGTAAAACCAGTTGAAGAAGTTAAACCAGTTGAAGAA
GTCAAACCAGTCGAAGAAGTCAAACCAGTTGAAGAAGTCAAACCAACTGAAGAAGTAAAA
CCAGTCGAAGAAGTCAAACAAGACGAAGAAGTCAANCCCAACTGAGGAAGTTAAACAAGT
CGAAGAAGTCAAACAAGTCGAANAAGTTAAGCAAGTCGAANAAGTTCAAACCANCTGANG
AAGTCANACCNGTTGAAGAAGTTTAAACCAGTTGAAGAAGTCAAA----------AGATT
TTAATGGCAGATCCAAATATTGCTCCATTATCAGCTTACTTGGGAATTTGTGGTATGCCT
GGAGTTACTGCATATTATGGAACTGTTTTAATTGGTAAACCAAAGAAAGGTGAAACATTA
GTTGTTAATGCAGCAGCTGGTGTAGTTGGTACCACCGTTGGACAAATTGGTAAAATCCTA
GGTCTAAGAGTTGTAGGTATTTGTGGTTCTGATGAAAAGGCAAAATCACTTATTAATGAT
TTCCATTTTGACTCTGTATTAAATTACCATAGTCCAACATATGCTGAAGATTTAAAAAAA
GCATGCCCAAATGGTATTGATATCTTTTATGAAAATGTTGGTGGTGAAGTATCTGATCCA
ATTCTCTTACTTTTGAATGTTCATGCAAGAGTTGCTTGTTGTGGCGCCATATCCGTTTAC
AATAAAAAAGTAACAGATGATATTGGACAAAGAGCCACAACACATAGTGTTTGANNAAAG
AATTACAANGCAAGGTTTCTTAGTATTTGATTATTCTGATGAAGAGTTATANAGATGCTT
TCCNACATTTATCAAAA