NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHA156
Library CH
(Link to library)
Clone ID CHA156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1|Contig-U16517-1
Original site URL
Representative seq. ID CHA156P
(Link to Original site)
Representative DNA sequence 
>CHA156 (CHA156Q) /CSM/CH/CHA1-C/CHA156Q.Seq.d/
CTGTTGGCCTACTGGNACAAAAAACATTTTCTAATAAAACAGTATAAATTAAAAAATGAC
TACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGG
AGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAA
TAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCA
AGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAAT
TGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTC
ATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGT
ATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACG
TCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGC
TTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGXXXX
XXXXXXAAGAATTAGCATGTAATCATGATCATAACAGTATTTATAATCATGTTTTAGAAA
TTGTAAATGATTCAAAATATACTGATAGAGATAAATTAGTATTAGTACTTTTATATAGTA
TTAGATATGAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTATCAAGTATTGGTATTC
CTCCAAAAGAAATTGGTTTAATTGATACATTAAGAGGATATGCAGGTGCAAGTTTAAGAG
AAGGTGATTTATTAGGAACTAAAAATATTTTTTCATTTGCAANAAGTGTTGTTAAACGTG
GTTTACAAGGTGTTNCTNATNTTTATACTCAACATAAACCATTATCACANGATATTTTAG
ATAGTATTTTAA
sequence update 2002.10.25
Translated Amino Acid sequence 
cwptgtknif**nsin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTN
NKVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLIS
LEMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITA
FNFPCAVLGWNAAISMIC---

---ELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGI
PPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFAXSVVKRGLQGVXXXYTQHKPLSXDIL
DSIL
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywxkkhflikqyklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk
**sycnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinf
irng*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhyc
fqfpmcrtwleccnlndl---

---kn*hvimiitvfiimf*kl*miqniliein*y*yfyivldmkmvefgn*kknyqvlv
flqkklv*lih*edmqvqv*ekviy*elkiffhlqxvllnvvykvxlxfilninhyhxif
*ivf*

Frame B:
cwptgtknif**nsin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTN
NKVIATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLIS
LEMGKIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITA
FNFPCAVLGWNAAISMIC---

---rism*s*s*qyl*scfrnck*fkiy**r*isistfi*y*i*rw*slgikrkiikywy
sskrnwfn*yikricrckfkrr*firn*kyfficxkcc*twftrcxxxlyst*tiitxyf
r*yf

Frame C:
vgllxqktfsnktv*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqi
ikllqllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh
*kwvkftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslll
sishvpylvgmlqsq*fa---

---ELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYEDGRVWELKEKLSSIGI
PPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFAXSVVKRGLQGVXXXYTQHKPLSXDIL
DSIL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA156 (CHA156Q) /CSM/CH/CHA1-C/CHA156Q.Seq.d/                       1832   0.0
SFH846 (SFH846Q) /CSM/SF/SFH8-B/SFH846Q.Seq.d/                       1154   0.0
SFC444 (SFC444Q) /CSM/SF/SFC4-B/SFC444Q.Seq.d/                       1150   0.0
CFC708 (CFC708Q) /CSM/CF/CFC7-A/CFC708Q.Seq.d/                       1150   0.0
CHC111 (CHC111Q) /CSM/CH/CHC1-A/CHC111Q.Seq.d/                       1148   0.0
VFN466 (VFN466Q) /CSM/VF/VFN4-C/VFN466Q.Seq.d/                       1144   0.0
SFI194 (SFI194Q) /CSM/SF/SFI1-D/SFI194Q.Seq.d/                       1144   0.0
CHE175 (CHE175Q) /CSM/CH/CHE1-D/CHE175Q.Seq.d/                       1142   0.0
CHE460 (CHE460Q) /CSM/CH/CHE4-C/CHE460Q.Seq.d/                       1140   0.0
AFA304 (AFA304Q) /CSM/AF/AFA3-A/AFA304Q.Seq.d/                       1138   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   769   0.0    7
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   7e-12  2
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   5e-09  28
CV149734|CV149734.1 Mdst6007g23.y1 Mdst Malus x domestica cDNA clone Mdst6007g23 5' similar to TR:Q9ZPB7 Q9ZPB7 PROTEIN ABUNDANTLY EXPRESSED DURING APPLE FRUIT DEVELOPMENT. ;, mRNA sequence.    72   2e-08  1
CN903667|CN903667.1 021018ABCA005552HT (ABCA) Royal Gala fruit stored at 0.5 degrees C for 24 hours Malus x domestica cDNA clone ABCA005552, mRNA sequence.    72   2e-08  1
CN883223|CN883223.1 010813AASB004877HT (AASB) Royal Gala 10 DAFB fruit Malus x domestica cDNA clone AASB004877, mRNA sequence.    72   2e-08  1
CV150833|CV150833.1 Mdst6010o01.y1 Mdst Malus x domestica cDNA clone Mdst6010o01 5' similar to TR:Q9ZPB7 Q9ZPB7 PROTEIN ABUNDANTLY EXPRESSED DURING APPLE FRUIT DEVELOPMENT. ;, mRNA sequence.    72   2e-08  1
CN875989|CN875989.1 020813AARA008546HT (AARA) Royal Gala partially senescing leaf Malus x domestica cDNA clone AARA008546, mRNA sequence.    72   2e-08  1
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   2e-08  1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   1e-07  17
dna update 2004. 9.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   369   e-100
(Q54GE3) RecName: Full=Vacuolar protein sorting-associated prote...   229   8e-59
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   228   2e-58
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   226   9e-58
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   223   9e-57
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   220   6e-56
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   219   1e-55
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   217   5e-55
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   216   9e-55
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   215   2e-54
protein update 2009. 3.28
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.53  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHA156 is nuc
5' end seq. ID CHA156F
5' end seq. 
>CHA156F.Seq
CTGTTGGCCTACTGGNACAAAAAACATTTTCTAATAAAACAGTATAAATTAAAAAATGAC
TACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGG
AGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAA
TAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCA
AGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAAT
TGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTC
ATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGT
ATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACG
TCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGC
TTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGNNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID CHA156Z
3' end seq. 
>CHA156Z.Seq
NNNNNNNNNNAAGAATTAGCATGTAATCATGATCATAACAGTATTTATAATCATGTTTTA
GAAATTGTAAATGATTCAAAATATACTGATAGAGATAAATTAGTATTAGTACTTTTATAT
AGTATTAGATATGAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTATCAAGTATTGGT
ATTCCTCCAAAAGAAATTGGTTTAATTGATACATTAAGAGGATATGCAGGTGCAAGTTTA
AGAGAAGGTGATTTATTAGGAACTAAAAATATTTTTTCATTTGCAANAAGTGTTGTTAAA
CGTGGTTTACAAGGTGTTNCTNATNTTTATACTCAACATAAACCATTATCACANGATATT
TTAGATAGTATTTTAA
Length of 3' end seq. 376
Connected seq. ID CHA156P
Connected seq. 
>CHA156P.Seq
CTGTTGGCCTACTGGNACAAAAAACATTTTCTAATAAAACAGTATAAATTAAAAAATGAC
TACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGG
AGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAA
TAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCA
AGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAAT
TGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTC
ATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGT
ATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACG
TCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGC
TTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCG----
------AAGAATTAGCATGTAATCATGATCATAACAGTATTTATAATCATGTTTTAGAAA
TTGTAAATGATTCAAAATATACTGATAGAGATAAATTAGTATTAGTACTTTTATATAGTA
TTAGATATGAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTATCAAGTATTGGTATTC
CTCCAAAAGAAATTGGTTTAATTGATACATTAAGAGGATATGCAGGTGCAAGTTTAAGAG
AAGGTGATTTATTAGGAACTAAAAATATTTTTTCATTTGCAANAAGTGTTGTTAAACGTG
GTTTACAAGGTGTTNCTNATNTTTATACTCAACATAAACCATTATCACANGATATTTTAG
ATAGTATTTTAA
Length of connected seq. 962
Full length Seq ID -
Full length Seq. -
Length of full length seq. -