>CHA152 (CHA152Q) /CSM/CH/CHA1-C/CHA152Q.Seq.d/
CACTGTTGGCCTACTGGNATTATATTTCACCACTTTGGTATACAACTGAATGTTTTAAAA
ATGTTGATGGTGTATGTATAAATTATACTGAACAAATGGTAATTGATTCTTGGATTAATT
TAACAAATTTATTTAAACAATATTGGAATTTATGGGCATTAGATATTAAAAATGAACCAC
ATGACCCAGTTACATGGGGTACTGGTAATCCTTCAACAGATTGGGATAAAGCATTTGTTA
GAATTGTAAATCAAATTGATTCATCAACAAATTTCAATGGTGTTTATTTTATTGAAGGTG
TTCAAAATAATCAAGGAATTTGTTCAAATATGTATAATAATTGGTGGGGTGGTAATATGT
CACCAGTAAGATGTTTCCCAATTTATTTGAATCAACCAAATCGTGTTGTCTACGCTCCAC
ATACCTATTGTTCAAGTGTTTTCGATCAAGAATTTTTCAATGCTCCAGATTATCCAAATA
ATATGCCAACCGTTTGGGACGCTGAATTTGGTTTCTTGGCTGATAATGTTCCAACCAATC
AATATGCAGNTTTATTAGGTGAATGGGGTTGTAAAGTXXXXXXXXXXCTAANCAAGTTGA
ACTTGGTACTTATAATAAAGTTTTAGAATTATTAGAATCAGGTAAACATGTAAGATATGG
TACTTATTCAAATGCTGAAACTGAACATGTTCGTGATTTACATTTATTGACATCAAAACC
AGCAATTTATTTAATCAATCTTTCTGAAGAAGATTTCATTAGAAAGAAGAATAAATGGTT
AGCAAAGATTAAAGCATGGGTTGATGAAAATGGTGGTGGTACAATGATTCCAGTTTCAGT
AAGTTTTGAAAAAGCTTTATTGGATTTATCTTCAGATGATGAAAGAAAAGCATATGAAAA
AGAAAAAGGTGCAGTTAGTATTATGCCAAAAATCATTAAAACTGGTTACAGCACATTAAA
TCTCATCAATTTCTTTACATGTGGTAAAGATGAAGTTAGAAGTTGGTGTTTACAAAAAGG
TAACAAAGCTCCACAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAAGGTTTCATTAT
GGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTAAAATCTGAAGCTGAATGTAAATC
AAGAGGAAAATATAGAATGGAAGGTAAAAACTATNAAGTTGTTGATGGTATATATTTTCT
TCAAATTCAACGTATCAAAAATAAGAAAAAATAATAAATAATTAAA

LLAYWXYISPLWYTTECFKNVDGVCINYTEQMVIDSWINLTNLFKQYWNLWALDIKNEPH
DPVTWGTGNPSTDWDKAFVRIVNQIDSSTNFNGVYFIEGVQNNQGICSNMYNNWWGGNMS
PVRCFPIYLNQPNRVVYAPHTYCSSVFDQEFFNAPDYPNNMPTVWDAEFGFLADNVPTNQ
YAXLLGEWGCK---

---XQVELGTYNKVLELLESGKHVRYGTYSNAETEHVRDLHLLTSKPAIYLINLSEEDFI
RKKNKWLAKIKAWVDENGGGTMIPVSVSFEKALLDLSSDDERKAYEKEKGAVSIMPKIIK
TGYSTLNLINFFTCGKDEVRSWCLQKGNKAPQAAGVIHTDFEKGFIMAETMAYSDFFELK
SEAECKSRGKYRMEGKNYXVVDGIYFLQIQRIKNKKK**iik

Frame A:
hcwptgiifhhfgiqlnvlkmlmvyv*iilnkw*lilgli*qiylnnigiygh*ilkmnh
mtqlhgvlvilqqigikhllel*iklihqqismvfillkvfkiikefvqiciiiggvvic
hq*dvsqfi*inqivlstlhipivqvfsiknfsmlqiiqiicqpfgtlnlvswlimfqpi
nmqxy*vngvvk---

---lxklnlvliikf*ny*nqvnm*dmvliqmlklnmfviyiy*hqnqqfi*siflkkis
lerring*qrlkhglmkmvvvq*fqfq*vlkklywiylqmmkekhmkkkkvqlvlcqksl
klvtah*issislhvvkmklevgvykkvtklhkllvsftliskkvslwlklwliltfsn*
nlklnvnqeeniewkvktxkllmvyiffkfnvskirknnk*l

Frame B:
tvgllxlyfttlvyn*mf*kc*wcmykly*tngn*fld*fnkfi*tilefmgiry*k*tt
*psymgyw*sfnrlg*sic*ncksn*finkfqwclfy*rcsk*srnlfkyv**lvgw*yv
tskmfpnlfestkscclrstyllfkcfrsrifqcsrlsk*yanrlgr*iwflg**csnqs
icxfir*mgl*s---

---*xs*twyl**sfriirir*tckiwylfkc*n*tcs*ftfidiktsnlfnqsf*rrfh
*kee*mvskd*smg**kwwwyndssfskf*ksfigfifr**kksi*krkrcs*yyaknh*
nwlqhikshqflymw*r*s*klvftkr*qsstscwchsh*frkrfhyg*nyglf*lfrik
i*s*m*ikrki*ngr*klxsc*wyifssnstyqk*ekiinn*

Frame C:
LLAYWXYISPLWYTTECFKNVDGVCINYTEQMVIDSWINLTNLFKQYWNLWALDIKNEPH
DPVTWGTGNPSTDWDKAFVRIVNQIDSSTNFNGVYFIEGVQNNQGICSNMYNNWWGGNMS
PVRCFPIYLNQPNRVVYAPHTYCSSVFDQEFFNAPDYPNNMPTVWDAEFGFLADNVPTNQ
YAXLLGEWGCK---

---XQVELGTYNKVLELLESGKHVRYGTYSNAETEHVRDLHLLTSKPAIYLINLSEEDFI
RKKNKWLAKIKAWVDENGGGTMIPVSVSFEKALLDLSSDDERKAYEKEKGAVSIMPKIIK
TGYSTLNLINFFTCGKDEVRSWCLQKGNKAPQAAGVIHTDFEKGFIMAETMAYSDFFELK
SEAECKSRGKYRMEGKNYXVVDGIYFLQIQRIKNKKK**iik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA152 (CHA152Q) /CSM/CH/CHA1-C/CHA152Q.Seq.d/                       2325   0.0
VFO147 (VFO147Q) /CSM/VF/VFO1-B/VFO147Q.Seq.d/                       1227   0.0
SFC630 (SFC630Q) /CSM/SF/SFC6-B/SFC630Q.Seq.d/                       1227   0.0
VFO224 (VFO224Q) /CSM/VF/VFO2-A/VFO224Q.Seq.d/                       1217   0.0
VFK212 (VFK212Q) /CSM/VF/VFK2-A/VFK212Q.Seq.d/                       1213   0.0
AFK414 (AFK414Q) /CSM/AF/AFK4-A/AFK414Q.Seq.d/                       1213   0.0
SFL255 (SFL255Q) /CSM/SF/SFL2-C/SFL255Q.Seq.d/                       1211   0.0
VFI192 (VFI192Q) /CSM/VF/VFI1-D/VFI192Q.Seq.d/                       1205   0.0
VFF322 (VFF322Q) /CSM/VF/VFF3-A/VFF322Q.Seq.d/                       1205   0.0
VFE271 (VFE271Q) /CSM/VF/VFE2-C/VFE271Q.Seq.d/                       1205   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CD114066|CD114066.1 ME1-0032P-A116-F12-U.G ME1-0032 Schistosoma mansoni cDNA cloneME1-0032P-A116-F12.G, mRNA sequence.    44   2e-11  4
CD080433|CD080433.1 MA3-9999U-M309-H09-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M309-H09.B, mRNA sequence.    44   6e-11  3
BF936899|BF936899.1 EST459954 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFCC91 5' end, mRNA sequence.    44   6e-11  3
AI975066|AI975066.1 EST269660 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAM41 5' end, mRNA sequence.    44   6e-11  3
CD120224|CD120224.1 ME1-0060T-D149-F02-U.G ME1-0060 Schistosoma mansoni cDNA clone ME1-0060T-D149-F02.G, mRNA sequence.    44   6e-11  3
CN594306|CN594306.1 TTE00010295 Normalized large Tetrahymena thermophila cDNA, mRNA sequence.    64   6e-11  3
BF699380|BF699380.1 602125956F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE:4283005 5', mRNA sequence.    48   2e-10  3
CD235701|CD235701.1 SS1_37_E02.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_37_E02_A012 3', mRNA sequence.    62   5e-10  4
CD211097|CD211097.1 HS1_61_A04.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_61_A04_A012 3', mRNA sequence.    62   5e-10  4
CB928193|CB928193.1 ABA1_37_D03.b1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_37_D03_A012 3', mRNA sequence.    62   5e-10  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ443128_1(DQ443128|pid:none) Bombyx mori GTP binding protein mR...   208   3e-52
AL844506_189(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...   206   1e-51
(P91917) RecName: Full=Putative GTP-binding protein tag-210;  &T...   206   1e-51
AP008214_456(AP008214|pid:none) Oryza sativa (japonica cultivar-...   206   2e-51
CP000596_68(CP000596|pid:none) Ostreococcus lucimarinus CCE9901 ...   205   2e-51
BT052517_1(BT052517|pid:none) Medicago truncatula clone MTYFD_FE...   204   7e-51
CP000589_33(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...   203   1e-50
AE017343_495(AE017343|pid:none) Cryptococcus neoformans var. neo...   202   2e-50
BT040728_1(BT040728|pid:none) Zea mays full-length cDNA clone ZM...   201   4e-50
CP000079_241(CP000079|pid:none) Leishmania major strain Friedlin...   200   9e-50

 psg: 0.87  gvh: 0.46  alm: 0.46  top: 0.33  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHA152 is nuc

>CHA152F.Seq
CACTGTTGGCCTACTGGNATTATATTTCACCACTTTGGTATACAACTGAATGTTTTAAAA
ATGTTGATGGTGTATGTATAAATTATACTGAACAAATGGTAATTGATTCTTGGATTAATT
TAACAAATTTATTTAAACAATATTGGAATTTATGGGCATTAGATATTAAAAATGAACCAC
ATGACCCAGTTACATGGGGTACTGGTAATCCTTCAACAGATTGGGATAAAGCATTTGTTA
GAATTGTAAATCAAATTGATTCATCAACAAATTTCAATGGTGTTTATTTTATTGAAGGTG
TTCAAAATAATCAAGGAATTTGTTCAAATATGTATAATAATTGGTGGGGTGGTAATATGT
CACCAGTAAGATGTTTCCCAATTTATTTGAATCAACCAAATCGTGTTGTCTACGCTCCAC
ATACCTATTGTTCAAGTGTTTTCGATCAAGAATTTTTCAATGCTCCAGATTATCCAAATA
ATATGCCAACCGTTTGGGACGCTGAATTTGGTTTCTTGGCTGATAATGTTCCAACCAATC
AATATGCAGNTTTATTAGGTGAATGGGGTTGTAAAGTNNNNNNNNNN

>CHA152Z.Seq
NNNNNNNNNNCTAANCAAGTTGAACTTGGTACTTATAATAAAGTTTTAGAATTATTAGAA
TCAGGTAAACATGTAAGATATGGTACTTATTCAAATGCTGAAACTGAACATGTTCGTGAT
TTACATTTATTGACATCAAAACCAGCAATTTATTTAATCAATCTTTCTGAAGAAGATTTC
ATTAGAAAGAAGAATAAATGGTTAGCAAAGATTAAAGCATGGGTTGATGAAAATGGTGGT
GGTACAATGATTCCAGTTTCAGTAAGTTTTGAAAAAGCTTTATTGGATTTATCTTCAGAT
GATGAAAGAAAAGCATATGAAAAAGAAAAAGGTGCAGTTAGTATTATGCCAAAAATCATT
AAAACTGGTTACAGCACATTAAATCTCATCAATTTCTTTACATGTGGTAAAGATGAAGTT
AGAAGTTGGTGTTTACAAAAAGGTAACAAAGCTCCACAAGCTGCTGGTGTCATTCACACT
GATTTCGAAAAAGGTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTA
AAATCTGAAGCTGAATGTAAATCAAGAGGAAAATATAGAATGGAAGGTAAAAACTATNAA
GTTGTTGATGGTATATATTTTCTTCAAATTCAACGTATCAAAAATAAGAAAAAATAATAA
ATAATTAAA

>CHA152P.Seq
CACTGTTGGCCTACTGGNATTATATTTCACCACTTTGGTATACAACTGAATGTTTTAAAA
ATGTTGATGGTGTATGTATAAATTATACTGAACAAATGGTAATTGATTCTTGGATTAATT
TAACAAATTTATTTAAACAATATTGGAATTTATGGGCATTAGATATTAAAAATGAACCAC
ATGACCCAGTTACATGGGGTACTGGTAATCCTTCAACAGATTGGGATAAAGCATTTGTTA
GAATTGTAAATCAAATTGATTCATCAACAAATTTCAATGGTGTTTATTTTATTGAAGGTG
TTCAAAATAATCAAGGAATTTGTTCAAATATGTATAATAATTGGTGGGGTGGTAATATGT
CACCAGTAAGATGTTTCCCAATTTATTTGAATCAACCAAATCGTGTTGTCTACGCTCCAC
ATACCTATTGTTCAAGTGTTTTCGATCAAGAATTTTTCAATGCTCCAGATTATCCAAATA
ATATGCCAACCGTTTGGGACGCTGAATTTGGTTTCTTGGCTGATAATGTTCCAACCAATC
AATATGCAGNTTTATTAGGTGAATGGGGTTGTAAAGT----------CTAANCAAGTTGA
ACTTGGTACTTATAATAAAGTTTTAGAATTATTAGAATCAGGTAAACATGTAAGATATGG
TACTTATTCAAATGCTGAAACTGAACATGTTCGTGATTTACATTTATTGACATCAAAACC
AGCAATTTATTTAATCAATCTTTCTGAAGAAGATTTCATTAGAAAGAAGAATAAATGGTT
AGCAAAGATTAAAGCATGGGTTGATGAAAATGGTGGTGGTACAATGATTCCAGTTTCAGT
AAGTTTTGAAAAAGCTTTATTGGATTTATCTTCAGATGATGAAAGAAAAGCATATGAAAA
AGAAAAAGGTGCAGTTAGTATTATGCCAAAAATCATTAAAACTGGTTACAGCACATTAAA
TCTCATCAATTTCTTTACATGTGGTAAAGATGAAGTTAGAAGTTGGTGTTTACAAAAAGG
TAACAAAGCTCCACAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAAGGTTTCATTAT
GGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTAAAATCTGAAGCTGAATGTAAATC
AAGAGGAAAATATAGAATGGAAGGTAAAAACTATNAAGTTGTTGATGGTATATATTTTCT
TCAAATTCAACGTATCAAAAATAAGAAAAAATAATAAATAATTAAA