CHA143
Library CH
(Link to library)
Clone ID CHA143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12315-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHA143 (CHA143Q) /CSM/CH/CHA1-B/CHA143Q.Seq.d/
XXXXXXXXXXATTACTACAATTAGTACACCACATTTAGATAATAAACATGTTGTATTTGG
TAAAGTTATTAAAGGAATGAGTGTTGTTAGAGAAATTGAAAGTCAACCAACAGGAGCAAA
TGATAAACCAATTAAAGATTGTATTATTATGGATTGTGGTGAATTAAAAGAAGGTGAAGA
TGACGGTGTACCAGAGAAAACTGGTGATGACAAATGGGAAGATTATCCACAAGATGATAA
TGTTGAAGGTAATGAAGCAAACTTAAAAGTTGGTGAAGCCATTAAAAACATTGGTAATGA
TTATTTTAAACAAGGTAAATCATTAGAAGCCATAGCCAAATACAATAAAGCATTAAGATA
TTTAGATTGTTGTAGTAATATCGATGGTTTAAAGAATGTTCAAACCATTTGTTATAATAA
TATGTCACAATGTTATTTAAAGGAAAAAAAAGGTTCCAATGCTTTGGTAGCTGCAAAAAA
AGCATTAGAATTATCACCAAATGATATTAAAGCACTCTTTAGAAAAGCTAAAGCTTTATC
TTTAATGGAGGAATATGATGAAGCTATCAAAGATTTCCAAAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---TTISTPHLDNKHVVFGKVIKGMSVVREIESQPTGANDKPIKDCIIMDCGELKEGEDD
GVPEKTGDDKWEDYPQDDNVEGNEANLKVGEAIKNIGNDYFKQGKSLEAIAKYNKALRYL
DCCSNIDGLKNVQTICYNNMSQCYLKEKKGSNALVAAKKALELSPNDIKALFRKAKALSL
MEEYDEAIKDFQ


Translated Amino Acid sequence (All Frames)
Frame A:
---llqlvhhi*iinmlylvkllke*vlleklkvnqqeqminqlkivllwivvn*kkvkm
tvyqrklvmtngkiihkmimlkvmkqt*klvkplktlvmiilnkvnh*kp*pntikh*di
*ivvvismv*rmfkpfviiichnvi*rkkkvpmlw*lqkkh*nyhqmilkhsleklklyl
*wrnmmklskisk


Frame B:
---yyn*yttfr**tcciw*sy*rnecc*rn*kstnrsk**tn*rlyyyglw*ikrr*r*
rctrenw**qmgrlstr**c*r**sklksw*sh*khw**lf*tr*iirshsqiq*sikif
rll**yrwfkecsnhll**yvtmlfkgkkrfqcfgsckksiriitk*y*stl*ks*sfif
nggi**syqrfpk


Frame C:
---TTISTPHLDNKHVVFGKVIKGMSVVREIESQPTGANDKPIKDCIIMDCGELKEGEDD
GVPEKTGDDKWEDYPQDDNVEGNEANLKVGEAIKNIGNDYFKQGKSLEAIAKYNKALRYL
DCCSNIDGLKNVQTICYNNMSQCYLKEKKGSNALVAAKKALELSPNDIKALFRKAKALSL
MEEYDEAIKDFQ


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHA143 (CHA143Q) /CSM/CH/CHA1-B/CHA143Q.Seq.d/ 1045 0.0
VFD272 (VFD272Q) /CSM/VF/VFD2-C/VFD272Q.Seq.d/ 1035 0.0
VFC858 (VFC858Q) /CSM/VF/VFC8-C/VFC858Q.Seq.d/ 1005 0.0
VFF758 (VFF758Q) /CSM/VF/VFF7-C/VFF758Q.Seq.d/ 973 0.0
VSA209 (VSA209Q) /CSM/VS/VSA2-A/VSA209Q.Seq.d/ 652 0.0
CHB890 (CHB890Q) /CSM/CH/CHB8-D/CHB890Q.Seq.d/ 303 2e-81
SLK849 (SLK849Q) /CSM/SL/SLK8-C/SLK849Q.Seq.d/ 159 6e-38
VFK629 (VFK629Q) /CSM/VF/VFK6-B/VFK629Q.Seq.d/ 121 1e-26
AFO662 (AFO662Q) /CSM/AF/AFO6-C/AFO662Q.Seq.d/ 111 1e-23
VHP805 (VHP805Q) /CSM/VH/VHP8-A/VHP805Q.Seq.d/ 40 0.037

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI816026|BI816026.1 PfESToaa35e05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum 3D7 cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 2e-07 2
BQ451076|BQ451076.1 PfESToab03e06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 2e-07 2
BQ577318|BQ577318.1 PfESToab17e07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 2e-07 2
BI670625|BI670625.1 PfESToaa02c05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 2e-07 2
BU498204|BU498204.1 PfESToab94b07.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 3e-07 2
BU495133|BU495133.1 PfESToab84g04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 3e-07 2
BU497865|BU497865.1 PfESToab89d06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 3e-07 2
U33869|U33869.1 Plasmodium falciparum cyclophilin mRNA, complete cds. 62 4e-07 2
BQ597053|BQ597053.1 PfESToab34a12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 9e-06 1
BI814491|BI814491.1 PfESToaa23d10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q25756 Q25756 CYCLOPHILIN ;, mRNA sequence. 62 9e-06 1
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC071388_1(BC071388|pid:none) Danio rerio peptidylprolyl isomera... 150 2e-35
FB823335_1(FB823335|pid:none) Sequence 42608 from Patent WO20080... 149 4e-35
(Q6DGG0) RecName: Full=40 kDa peptidyl-prolyl cis-trans isomeras... 148 9e-35
L11668_1(L11668|pid:none) Cow cyclophilin-40 mRNA, partial cds. 144 2e-33
BT043603_1(BT043603|pid:none) Salmo salar clone HM4_3222 peptidy... 144 2e-33
(Q08752) RecName: Full=40 kDa peptidyl-prolyl cis-trans isomeras... 144 2e-33
AY893314_1(AY893314|pid:none) Synthetic construct Homo sapiens c... 144 2e-33
(P0C1I1) RecName: Full=Peptidyl-prolyl cis-trans isomerase D; ... 141 1e-32
AK068112_1(AK068112|pid:none) Oryza sativa Japonica Group cDNA c... 141 1e-32
BT073249_1(BT073249|pid:none) Oncorhynchus mykiss clone omyk-evn... 141 1e-32
protein update 2009. 5.17
PSORT

psg: 0.79 gvh: 0.45 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHA143 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHA143Z
3' end seq.
>CHA143Z.Seq
NNNNNNNNNNATTACTACAATTAGTACACCACATTTAGATAATAAACATGTTGTATTTGG
TAAAGTTATTAAAGGAATGAGTGTTGTTAGAGAAATTGAAAGTCAACCAACAGGAGCAAA
TGATAAACCAATTAAAGATTGTATTATTATGGATTGTGGTGAATTAAAAGAAGGTGAAGA
TGACGGTGTACCAGAGAAAACTGGTGATGACAAATGGGAAGATTATCCACAAGATGATAA
TGTTGAAGGTAATGAAGCAAACTTAAAAGTTGGTGAAGCCATTAAAAACATTGGTAATGA
TTATTTTAAACAAGGTAAATCATTAGAAGCCATAGCCAAATACAATAAAGCATTAAGATA
TTTAGATTGTTGTAGTAATATCGATGGTTTAAAGAATGTTCAAACCATTTGTTATAATAA
TATGTCACAATGTTATTTAAAGGAAAAAAAAGGTTCCAATGCTTTGGTAGCTGCAAAAAA
AGCATTAGAATTATCACCAAATGATATTAAAGCACTCTTTAGAAAAGCTAAAGCTTTATC
TTTAATGGAGGAATATGATGAAGCTATCAAAGATTTCCAAAA
Length of 3' end seq. 582
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -