AFF240
Library AF
(Link to library)
Clone ID AFF240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11212-1
Original site URL
Representative seq. ID AFF240Z
(Link to Original site)
Representative DNA sequence
>AFF240 (AFF240Q) /CSM/AF/AFF2-B/AFF240Q.Seq.d/
XXXXXXXXXXCTTGGTAANATTTCAGGAGGNGCTNATCNAGCTCAAGGTGATGAAAATGA
AAATGNTTNNCAAGAANACNTGGATNGTAATGAATTAGATANAATGGTTGGTAAANAANG
CTTATANTGTGGTGATATAANGATTAGATCNATTGNACNACCCTTTATTGGNTTGGATGA
AATTGNAACNTTANAANCNTGGGAAATTTAAAANCNAAAAAAAAAAAAGAAAACAATAAA
AGAATAATAATAATAAATAAAAAAAATAAATAAAAAGTAAAATATAAATAAGTGTTAAAT
TAATAATAAAATTGTTACATCATCCACAATTATTTTAAAAAAAAATAAATGAAATTAAAA
GTTA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---GXISGGAXXAQGDENENXXQEXXDXNELDXMVGKXXLXCGDIXIRSIXXPFIGLDEI
XTLXXWEI*xxkkkkktike****ikkinkk*ninkc*innkivtsstiilkknk*n*kl


Translated Amino Acid sequence (All Frames)
Frame A:
---lvxfqexlixlkvmkmkmxxkxtwxvmn*ixwlvxxayxvvi*xldxlxxpllxwmk
lxxxxxgkfkxxkkkrkq*knnnnk*kk*ikski*isvkliikllhhpqlf*kkineiks


Frame B:
---w*xfrrxxsssr**k*kxxxrxxgx**irxngw*xxlixw*yxd*ixxttlywxg*n
xnxxxxgnlkxkkkkennkriiiinkknk*kvkyk*vln***ncyiihnyfkkk*mklkv


Frame C:
---GXISGGAXXAQGDENENXXQEXXDXNELDXMVGKXXLXCGDIXIRSIXXPFIGLDEI
XTLXXWEI*xxkkkkktike****ikkinkk*ninkc*innkivtsstiilkknk*n*kl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFF240 (AFF240Q) /CSM/AF/AFF2-B/AFF240Q.Seq.d/ 260 1e-68
VHP306 (VHP306Q) /CSM/VH/VHP3-A/VHP306Q.Seq.d/ 198 4e-50
SHA758 (SHA758Q) /CSM/SH/SHA7-C/SHA758Q.Seq.d/ 198 4e-50
AHB810 (AHB810Q) /CSM/AH/AHB8-A/AHB810Q.Seq.d/ 198 4e-50
VHD320 (VHD320Q) /CSM/VH/VHD3-A/VHD320Q.Seq.d/ 196 2e-49
VHE648 (VHE648Q) /CSM/VH/VHE6-B/VHE648Q.Seq.d/ 184 6e-46
VHC879 (VHC879Q) /CSM/VH/VHC8-D/VHC879Q.Seq.d/ 184 6e-46
VHE890 (VHE890Q) /CSM/VH/VHE8-D/VHE890Q.Seq.d/ 180 1e-44
AHL301 (AHL301Q) /CSM/AH/AHL3-A/AHL301Q.Seq.d/ 178 4e-44
VHC229 (VHC229Q) /CSM/VH/VHC2-B/VHC229Q.Seq.d/ 163 2e-39

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CC901303|CC901303.1 ZMMBBb0237K14.r ZMMBBb Zea mays genomic clone ZMMBBb0237K14 3', genomic survey sequence. 46 0.35 1
BZ402539|BZ402539.1 OGAAN59TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0017H03, DNA sequence. 46 0.35 1
CL236035|CL236035.1 ZMMBBb0577H08f ZMMBBb (HindIII) Zea mays subsp. mays genomic clone ZMMBBb0577H08 5', genomic survey sequence. 46 0.35 1
CL261567|CL261567.1 ZMMBBb0616I12r ZMMBBb (HindIII) Zea mays subsp. mays genomic clone ZMMBBb0616I12 3', genomic survey sequence. 46 0.35 1
CG830936|CG830936.1 ZMMBBc0253J11f ZMMBBc (EcoRI) Zea mays subsp. mays genomic clone ZMMBBc0253J11 5', genomic survey sequence. 46 0.35 1
CL285740|CL285740.1 ZMMBBb0630P01f ZMMBBb (HindIII) Zea mays subsp. mays genomic clone ZMMBBb0630P01 5', genomic survey sequence. 46 0.35 1
CG024773|CG024773.1 ZMMBBc0562M09r ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0562M09 3', genomic survey sequence. 46 0.35 1
CC939504|CC939504.1 ZMMBBb0239A06.f ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0239A06 5', genomic survey sequence. 46 0.35 1
CG467387|CG467387.1 ZMMBBb0252P07.f ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0252P07 5', genomic survey sequence. 46 0.35 1
BZ646733|BZ646733.1 OGANA53TM ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0098J09, DNA sequence. 46 0.35 1
dna update 2004. 5. 5
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 194,165,741
protein update 2009. 4.19
PSORT

psg: 0.85 gvh: 0.42 alm: 0.47 top: 0.07 tms: 0.00 mit: 0.07 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.50
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for AFF240 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFF240Z
3' end seq.
>AFF240Z.Seq
----------CTTGGTAANATTTCAGGAGGNGCTNATCNAGCTCAAGGTGATGAAAATGA
AAATGNTTNNCAAGAANACNTGGATNGTAATGAATTAGATANAATGGTTGGTAAANAANG
CTTATANTGTGGTGATATAANGATTAGATCNATTGNACNACCCTTTATTGGNTTGGATGA
AATTGNAACNTTANAANCNTGGGAAATTTAAAANCNAAAAAAAAAAAAGAAAACAATAAA
AGAATAATAATAATAAATAAAAAAAATAAATAAAAAGTAAAATATAAATAAGTGTTAAAT
TAATAATAAAATTGTTACATCATCCACAATTATTTTAAAAAAAAATAAATGAAATTAAAA
GTTA
Length of 3' end seq. 354
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -