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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFF239
Library AF
(Link to library)
Clone ID AFF239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16268-1
Original site URL
Representative seq. ID AFF239P
(Link to Original site)
Representative DNA sequence 
>AFF239 (AFF239Q) /CSM/AF/AFF2-B/AFF239Q.Seq.d/
CACTTTTTATTTTTGTATTATATTCTCTCTTTATTTCTTTTCTATATATAGATAAATTTT
TTTTAGAAAAACTAAAAAAAAAACCTCAAACAATTAATACAAAATGGTAAACATTGGTGG
AACTCAAGAAAAATGTACTGCATGTGCTAAAACTGTATACTTAACAGAAAAGATTGTAGT
TGAAGATAAAGAAGATAAGAAAACTTTCCACAAATTATGTTTAAAATGTACTCACTGTAA
GCTTACATTAAGTCTTGGTAACTATGCATCATTAAATGGTGTATTCTATTGTAAACCACA
TTTCAAACAATTATTCGCCACCAAAGGTAACTACGATGAAGGTTTCGGTAAATCAAAACA
TTCTGAAAAATGGACACCACAAGCCACCCCAACTGGTACTTCTTCATTCATTCCAGTTGA
AGAATCAAAATCATCAGAAAAGAAAGAAACACCAACAACAATTTCATCAAAATTCTCAGG
ATCAACTGAAAAATGTAATCTCTGTAATAAGACAGTNTATTTAACAGAAAAGATTGTTGT
TGAAGATAAAGAAGATAAGAAAGTNTTACATAAACAATGTTTGAAATGTACACATTGTAG
TGTTGTATTAAATCTTGGTACCTATGCATCAATGAAAGGTGTATTCTATTGTAAACCACA
TTTCAAACAATTATTCNCCNCCAAAGGTAACTATGATGAAAGTTTTTGGTAACAACAAAG
CCNCCGATNAATGGGCACCACAAACCAXXXXXXXXXXCTTTAAANAACTNTATGCCNCTC
AAGGTAATTTANATGGTGGNTTCGGTAAACCNAAACNCTNTGAAAAATGGGAAAATAACC
CNTTCCCATATTTANAAAAGGATAGCAGTTATGNACCNTCCGTTGAAAAGGTTGAATNTC
AAATGAATAATGCTTCATCTGAATCTGATGNTGATAGATTTNAAAATATTAACAATGATG
ATTNTGATNAACCAANAAGNCAACAACAACCAGTTTNTCAACCAGAANAAGAACNACNAC
NACAAGAANAAGAAAAAGTTNAAGAACCNATCTNTGAANAANAANAAAAAGTTGAANAAA
AAGTTGAAGAACCNGTCGCTGAACAANAANAANAAAAGGTTNAGGAACCNGTTGNTGCTG
AANAANAAAAAGTTGAAGAACCNGNTACTGAAGAANAAAAAGTTGAAGAACC
sequence update 2001. 6. 2
Translated Amino Acid sequence 
lfifvlyslfisflyidkffleklkkkpqtintkw*tlvelkknvlhvlklyt*qkrl*l
kikkirklstnyv*nvltvslh*vlvtmhh*mvysivnhisnnysppkvttmkvsvnqni
lknghhkppqlvllhsfqlknqnhqkrkkhqqqfhqnsqdqlknvisvirqxi*qkrlll
kikkirkxyinnv*nvhivvly*ilvpmhq*KVYSIVNHISNNYSPPKVTMMKVFGNNKA
XDXWAPQT---

---FKXLYAXQGNLXGGFGKPKXXEKWENNPFPYLXKDSSYXPSVEKVEXQMNNASSESD
XDRFXNINNDDXDXPXXQQQPVXQPEXEXXXQEXEKVXEPIXEXXXKVEXKVEEPVAEQX
XXKVXEPVXAEXXKVEEPXTEEXKVEE
Translated Amino Acid sequence (All Frames) 
Frame A:
hflflyyilslflfyi*inff*kn*kknlkqliqngkhwwnsrkmycmc*ncilnrkdcs
*r*rr*enfpqimfkmysl*ayiksw*lciikwcill*ttfqtiirhqr*lr*rfr*ikt
f*kmdttshpnwyffihss*rikiirkerntnnnfikilrin*km*sl**dsxfnrkdcc
*r*rr*esxt*tmfemytl*ccikswylcinercill*ttfqtiixxqr*l**kflvttk
ppxnghhkp---

---l*xtxcxsr*fxwwxr*txtl*kmgk*pxpifxkg*qlxtxr*kg*xsne*cfi*i*
x**ixky*q**x*xtxkxtttsxstrxrttttrxrksxrtxl*xxxks*xks*rtxr*tx
xxkgxgtxxc*xxks*rtxy*rxks*rt

Frame B:
tfyfciifslyffsiyr*iffrktkkktsnn*ykmvniggtqekctacaktvyltekivv
edkedkktfhklclkcthckltlslgnyaslngvfyckphfkqlfatkgnydegfgkskh
sekwtpqatptgtssfipveeskssekketpttisskfsgstekcnlcnktvyltekivv
edkedkkvlhkqclkcthcsvvlnlgtyasmkgvfyckphfkqlfxxkgnydesfw*qqs
xrxmgttn---

---FKXLYAXQGNLXGGFGKPKXXEKWENNPFPYLXKDSSYXPSVEKVEXQMNNASSESD
XDRFXNINNDDXDXPXXQQQPVXQPEXEXXXQEXEKVXEPIXEXXXKVEXKVEEPVAEQX
XXKVXEPVXAEXXKVEEPXTEEXKVEE

Frame C:
lfifvlyslfisflyidkffleklkkkpqtintkw*tlvelkknvlhvlklyt*qkrl*l
kikkirklstnyv*nvltvslh*vlvtmhh*mvysivnhisnnysppkvttmkvsvnqni
lknghhkppqlvllhsfqlknqnhqkrkkhqqqfhqnsqdqlknvisvirqxi*qkrlll
kikkirkxyinnv*nvhivvly*ilvpmhq*KVYSIVNHISNNYSPPKVTMMKVFGNNKA
XDXWAPQT---

---lxnxmplkvixmvxsvnxnxxkngkitxshixkriavmxxplkrlnxk*imlhlnlm
xidxkiltmmixxnqxxnnnqfxnqxknxxxkxkkkxknxsxxxxkklxkklknxslnxx
xkrxrnxlxlxxkklknxxlkxkklkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFF239 (AFF239Q) /CSM/AF/AFF2-B/AFF239Q.Seq.d/                       1572   0.0
AFL333 (AFL333Q) /CSM/AF/AFL3-B/AFL333Q.Seq.d/                       1259   0.0
AFG415 (AFG415Q) /CSM/AF/AFG4-A/AFG415Q.Seq.d/                       1257   0.0
AFN295 (AFN295Q) /CSM/AF/AFN2-D/AFN295Q.Seq.d/                       1253   0.0
AFE756 (AFE756Q) /CSM/AF/AFE7-C/AFE756Q.Seq.d/                       1253   0.0
SFE749 (SFE749Q) /CSM/SF/SFE7-C/SFE749Q.Seq.d/                       1251   0.0
AFL234 (AFL234Q) /CSM/AF/AFL2-B/AFL234Q.Seq.d/                       1251   0.0
AFL719 (AFL719Q) /CSM/AF/AFL7-A/AFL719Q.Seq.d/                       1249   0.0
CHO514 (CHO514Q) /CSM/CH/CHO5-A/CHO514Q.Seq.d/                       1247   0.0
AFF609 (AFF609Q) /CSM/AF/AFF6-A/AFF609Q.Seq.d/                       1245   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BE858201|BE858201.1 7g19d02.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone IMAGE:3306915 3'TR:Q9Y659 TR:Q9UIY0 ;, mRNA sequence.    52   0.019  1
BI504534|BI504534.1 BB170004B20D05 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170004B20D05 5', mRNA sequence.    38   0.059  2
BX569785|BX569785.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.12   10
CR388152|CR388152.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-220F21.    48   0.30   1
BU904505|BU904505.1 AGENCOURT_10155025 NICHD_XGC_Kid1 Xenopus laevis cDNA clone IMAGE:4032052 5', mRNA sequence.    38   0.37   2
BX322647|BX322647.11 Zebrafish DNA sequence from clone DKEYP-86F8 in linkage group 1.    36   0.46   11
BI747172|BI747172.1 rm36g08.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to contains element MER28 MER35 repetitive element ;, mRNA sequence.    42   0.88   2
AC137615|AC137615.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0053F13, from chromosome 5, complete sequence.    38   0.90   3
AC024283|AC024283.2 Homo sapiens clone RP11-20O4, WORKING DRAFT SEQUENCE, 47 unordered pieces.    46   1.2    1
BI142917|BI142917.1 rk76b12.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5', mRNA sequence.    46   1.2    1
dna update 2004. 5. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF184886_1(AF184886|pid:none) Nicotiana tabacum LIM domain prote...   116   1e-24
AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr...   114   5e-24
EF035040_1(EF035040|pid:none) Populus tremula x Populus alba LIM...   114   6e-24
EF146377_1(EF146377|pid:none) Populus trichocarpa clone WS0117_L...   114   6e-24
AM469183_1(AM469183|pid:none) Vitis vinifera contig VV78X221882....   114   6e-24
AC004665_22(AC004665|pid:none) Arabidopsis thaliana chromosome 2...   113   1e-23
EF148212_1(EF148212|pid:none) Populus trichocarpa clone WS0128_M...   113   1e-23
AK317129_1(AK317129|pid:none) Arabidopsis thaliana AT3G55770 mRN...   111   5e-23
EU496813_1(EU496813|pid:none) Nicotiana tabacum LIM domain prote...   110   1e-22
AF443117_1(AF443117|pid:none) Gossypium hirsutum LIM domain prot...   110   1e-22
protein update 2009. 4.19
PSORT 

 psg: 0.79  gvh: 0.48  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for AFF239 is nuc
5' end seq. ID AFF239F
5' end seq. 
>AFF239F.Seq
CACTTTTTATTTTTGTATTATATTCTCTCTTTATTTCTTTTCTATATATAGATAAATTTT
TTTTAGAAAAACTAAAAAAAAAACCTCAAACAATTAATACAAAATGGTAAACATTGGTGG
AACTCAAGAAAAATGTACTGCATGTGCTAAAACTGTATACTTAACAGAAAAGATTGTAGT
TGAAGATAAAGAAGATAAGAAAACTTTCCACAAATTATGTTTAAAATGTACTCACTGTAA
GCTTACATTAAGTCTTGGTAACTATGCATCATTAAATGGTGTATTCTATTGTAAACCACA
TTTCAAACAATTATTCGCCACCAAAGGTAACTACGATGAAGGTTTCGGTAAATCAAAACA
TTCTGAAAAATGGACACCACAAGCCACCCCAACTGGTACTTCTTCATTCATTCCAGTTGA
AGAATCAAAATCATCAGAAAAGAAAGAAACACCAACAACAATTTCATCAAAATTCTCAGG
ATCAACTGAAAAATGTAATCTCTGTAATAAGACAGTNTATTTAACAGAAAAGATTGTTGT
TGAAGATAAAGAAGATAAGAAAGTNTTACATAAACAATGTTTGAAATGTACACATTGTAG
TGTTGTATTAAATCTTGGTACCTATGCATCAATGAAAGGTGTATTCTATTGTAAACCACA
TTTCAAACAATTATTCNCCNCCAAAGGTAACTATGATGAAAGTTTTTGGTAACAACAAAG
CCNCCGATNAATGGGCACCACAAACCA----------
Length of 5' end seq. 747
3' end seq. ID AFF239Z
3' end seq. 
>AFF239Z.Seq
----------CTTTAAANAACTNTATGCCNCTCAAGGTAATTTANATGGTGGNTTCGGTA
AACCNAAACNCTNTGAAAAATGGGAAAATAACCCNTTCCCATATTTANAAAAGGATAGCA
GTTATGNACCNTCCGTTGAAAAGGTTGAATNTCAAATGAATAATGCTTCATCTGAATCTG
ATGNTGATAGATTTNAAAATATTAACAATGATGATTNTGATNAACCAANAAGNCAACAAC
AACCAGTTTNTCAACCAGAANAAGAACNACNACNACAAGAANAAGAAAAAGTTNAAGAAC
CNATCTNTGAANAANAANAAAAAGTTGAANAAAAAGTTGAAGAACCNGTCGCTGAACAAN
AANAANAAAAGGTTNAGGAACCNGTTGNTGCTGAANAANAAAAAGTTGAAGAACCNGNTA
CTGAAGAANAAAAAGTTGAAGAACC
Length of 3' end seq. 435
Connected seq. ID AFF239P
Connected seq. 
>AFF239P.Seq
CACTTTTTATTTTTGTATTATATTCTCTCTTTATTTCTTTTCTATATATAGATAAATTTT
TTTTAGAAAAACTAAAAAAAAAACCTCAAACAATTAATACAAAATGGTAAACATTGGTGG
AACTCAAGAAAAATGTACTGCATGTGCTAAAACTGTATACTTAACAGAAAAGATTGTAGT
TGAAGATAAAGAAGATAAGAAAACTTTCCACAAATTATGTTTAAAATGTACTCACTGTAA
GCTTACATTAAGTCTTGGTAACTATGCATCATTAAATGGTGTATTCTATTGTAAACCACA
TTTCAAACAATTATTCGCCACCAAAGGTAACTACGATGAAGGTTTCGGTAAATCAAAACA
TTCTGAAAAATGGACACCACAAGCCACCCCAACTGGTACTTCTTCATTCATTCCAGTTGA
AGAATCAAAATCATCAGAAAAGAAAGAAACACCAACAACAATTTCATCAAAATTCTCAGG
ATCAACTGAAAAATGTAATCTCTGTAATAAGACAGTNTATTTAACAGAAAAGATTGTTGT
TGAAGATAAAGAAGATAAGAAAGTNTTACATAAACAATGTTTGAAATGTACACATTGTAG
TGTTGTATTAAATCTTGGTACCTATGCATCAATGAAAGGTGTATTCTATTGTAAACCACA
TTTCAAACAATTATTCNCCNCCAAAGGTAACTATGATGAAAGTTTTTGGTAACAACAAAG
CCNCCGATNAATGGGCACCACAAACCA----------CTTTAAANAACTNTATGCCNCTC
AAGGTAATTTANATGGTGGNTTCGGTAAACCNAAACNCTNTGAAAAATGGGAAAATAACC
CNTTCCCATATTTANAAAAGGATAGCAGTTATGNACCNTCCGTTGAAAAGGTTGAATNTC
AAATGAATAATGCTTCATCTGAATCTGATGNTGATAGATTTNAAAATATTAACAATGATG
ATTNTGATNAACCAANAAGNCAACAACAACCAGTTTNTCAACCAGAANAAGAACNACNAC
NACAAGAANAAGAAAAAGTTNAAGAACCNATCTNTGAANAANAANAAAAAGTTGAANAAA
AAGTTGAAGAACCNGTCGCTGAACAANAANAANAAAAGGTTNAGGAACCNGTTGNTGCTG
AANAANAAAAAGTTGAAGAACCNGNTACTGAAGAANAAAAAGTTGAAGAACC
Length of connected seq. 1182
Full length Seq ID -
Full length Seq. -
Length of full length seq. -