>CHA114 (CHA114Q) /CSM/CH/CHA1-A/CHA114Q.Seq.d/
XXXXXXXXXXTTCAGTTGGTGATATTCAAAACTTTGATTTATCAGTTTGCGATACTCAAC
CAGCTGCAATCGGTGGTGCACTTGATGAATTCATTTTCTCACCACGTTGTGATAATTTGG
GTATGTCATATTGCGCAATGATTGGTTTATTGAATGTCAAAGAATCAACATTGGCACAAG
AGGAGAATGTATTGAATGTGATATTATTCGATAATGAAGAGGTTGGCTCAAGTTCACCAC
AAGGTGCATGTGCACCATTGATCAATGATACCATTAGTCGTGTCAATAGCTCAATGTTTG
CATCCACTTGTAAACCACATGAATTAAACAATTTCATTGATTTAACTTTAAGAAATAGTT
TCTTAATCTCTGCTGATATGGCACATGCTATTCATCCAAATTACACAGCAAATCATGAAC
CACTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATCAAATATAATGCAAATTTACGTT
ATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATATCTGTAAAAAGAATGGTATCC
CAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTGGTTCAACAATTGGTCCAATCA
TTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTAATCCACAATTATCAATGCATT
CAATTCGTGAAACTTGTGGTGTTGCNGATATCACTCAGGTATTAATTNATTCAAAAAATT
TNAACAATTACAAAAT

---SVGDIQNFDLSVCDTQPAAIGGALDEFIFSPRCDNLGMSYCAMIGLLNVKESTLAQE
ENVLNVILFDNEEVGSSSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSF
LISADMAHAIHPNYTANHEPLHRPALNKGPVIKYNANLRYASNGPTSFVILDICKKNGIP
IQEFLVKNDSPCGSTIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITQVLIXSKNX
NNYK

Frame A:
---SVGDIQNFDLSVCDTQPAAIGGALDEFIFSPRCDNLGMSYCAMIGLLNVKESTLAQE
ENVLNVILFDNEEVGSSSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSF
LISADMAHAIHPNYTANHEPLHRPALNKGPVIKYNANLRYASNGPTSFVILDICKKNGIP
IQEFLVKNDSPCGSTIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITQVLIXSKNX
NNYK


Frame B:
---qlvifktliyqfailnqlqsvvhlmnsfshhvviiwvchiaq*lvy*msknqhwhkr
rmy*m*yysimkrlaqvhhkvhvhh*smiplvvsiaqclhplvnhmn*tisli*l*eivs
*slliwhmlfiqitqqimnhfidqllikvq*snimqiyvmlqmvqlvllswisvkrmvsq
fknssskmihhvvqqlvqsflvlmvlel*ilvihnyqciqfvklvvlxislry*xiqkix
titk


Frame C:
---sw*yskl*fislrystscnrwct**ihflttl**fgyvilrndwfiecqrinigtrg
eciecdiir**rgwlkfttrcmctidq*yh*scq*lnvcihl*tt*ikqfh*fnfkk*fl
nlc*ygtcyssklhsks*tts*tss**rssnqi*ckftlcfkwsn*fcylgyl*kewypn
sriprqk*ftmwfnnwsnhfwylwy*ncryw*stiinafns*nlwccxyhsginxfkkfx
qlqn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHA114 (CHA114Q) /CSM/CH/CHA1-A/CHA114Q.Seq.d/                       1421   0.0
SFL484 (SFL484Q) /CSM/SF/SFL4-D/SFL484Q.Seq.d/                       1392   0.0
CFG366 (CFG366Q) /CSM/CF/CFG3-C/CFG366Q.Seq.d/                       1392   0.0
AFD815 (AFD815Q) /CSM/AF/AFD8-A/AFD815Q.Seq.d/                       1372   0.0
AFM702 (AFM702Q) /CSM/AF/AFM7-A/AFM702Q.Seq.d/                       1366   0.0
VFH686 (VFH686Q) /CSM/VF/VFH6-D/VFH686Q.Seq.d/                       1362   0.0
CHD160 (CHD160Q) /CSM/CH/CHD1-C/CHD160Q.Seq.d/                       1362   0.0
AFM822 (AFM822Q) /CSM/AF/AFM8-A/AFM822Q.Seq.d/                       1362   0.0
AFL507 (AFL507Q) /CSM/AF/AFL5-A/AFL507Q.Seq.d/                       1360   0.0
AFA569 (AFA569Q) /CSM/AF/AFA5-C/AFA569Q.Seq.d/                       1358   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM518933|BM518933.1 894103E07.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence.    54   3e-06  2
CB380700|CB380700.1 3529_1_23_1_H04.x_4 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence.    38   3e-05  3
BG103186|BG103186.1 RHIZ2_19_C02.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence.    38   4e-04  3
BG103106|BG103106.1 RHIZ2_18_C03.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA sequence.    38   5e-04  3
BG356680|BG356680.1 OV2_26_E12.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence.    38   5e-04  3
BE355215|BE355215.1 DG1_10_A09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence.    38   5e-04  3
BU098580|BU098580.1 946136E12.y1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence.    38   6e-04  3
BU571833|BU571833.1 946185C11.y1 946 - tassel primordium prepared by Schmidt lab Zea mays cDNA, mRNA sequence.    38   7e-04  3
AW934142|AW934142.1 EST359985 tomato fruit mature green, TAMU Lycopersicon esculentum cDNA clone cLEF58A5 5', mRNA sequence.    40   0.005  2
BE353582|BE353582.1 EST353863 tomato flower buds 0-3 mm, Cornell University Lycopersicon esculentum cDNA clone cTOA19I18, mRNA sequence.    40   0.006  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M70) RecName: Full=Aspartyl aminopeptidase;          EC=3.4....   465   e-130
AC159446_25(AC159446|pid:none) Trypanosoma brucei chromosome 3 c...   236   5e-61
CP000592_232(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...   235   1e-60
AM494966_233(AM494966|pid:none) Leishmania braziliensis chromoso...   233   4e-60
CR954212_224(CR954212|pid:none) Ostreococcus tauri strain OTTH05...   231   2e-59
EU954490_1(EU954490|pid:none) Zea mays clone 1468685 unknown mRNA.    230   4e-59
BT062007_1(BT062007|pid:none) Zea mays full-length cDNA clone ZM...   230   4e-59
AB008271_3(AB008271|pid:none) Arabidopsis thaliana genomic DNA, ...   227   2e-58
AK118814_1(AK118814|pid:none) Arabidopsis thaliana At5g04710 mRN...   227   2e-58
AJ720587_1(AJ720587|pid:none) Gallus gallus mRNA for hypothetica...   224   2e-57

 psg: 0.75  gvh: 0.47  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHA114 is cyt

>CHA114Z.Seq
NNNNNNNNNNTTCAGTTGGTGATATTCAAAACTTTGATTTATCAGTTTGCGATACTCAAC
CAGCTGCAATCGGTGGTGCACTTGATGAATTCATTTTCTCACCACGTTGTGATAATTTGG
GTATGTCATATTGCGCAATGATTGGTTTATTGAATGTCAAAGAATCAACATTGGCACAAG
AGGAGAATGTATTGAATGTGATATTATTCGATAATGAAGAGGTTGGCTCAAGTTCACCAC
AAGGTGCATGTGCACCATTGATCAATGATACCATTAGTCGTGTCAATAGCTCAATGTTTG
CATCCACTTGTAAACCACATGAATTAAACAATTTCATTGATTTAACTTTAAGAAATAGTT
TCTTAATCTCTGCTGATATGGCACATGCTATTCATCCAAATTACACAGCAAATCATGAAC
CACTTCATAGACCAGCTCTTAATAAAGGTCCAGTAATCAAATATAATGCAAATTTACGTT
ATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATATCTGTAAAAAGAATGGTATCC
CAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTGGTTCAACAATTGGTCCAATCA
TTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTAATCCACAATTATCAATGCATT
CAATTCGTGAAACTTGTGGTGTTGCNGATATCACTCAGGTATTAATTNATTCAAAAAATT
TNAACAATTACAAAAT