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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFK405
Library CF
(Link to library)
Clone ID CFK405
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFK405P
(Link to Original site)
Representative DNA sequence 
>CFK405 (CFK405Q) /CSM/CF/CFK4-A/CFK405Q.Seq.d/
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGXXXXXXXXXXGAAGG
TNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANAT
CAGTGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAACATGATGCTCCNATNGT
AAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGATGC
TTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAACAATCA
AAANAATATNTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTAAA
TGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGACCGGAGG
TGGTAAANAATCTGGCTCANACAGCTGGAAACAGTATTGCCGTCGTAGNACTAANACNAT
CNACCTATGGTAANACTATGCCNTTATCNCAAGGNATCNATTTTAACTAAAATTACCNAA
AAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAG
sequence update 2001.11.22
Translated Amino Acid sequence 
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMIC---

---EGXXXIKXQGGKVVIGGNKLXISGGNFVXPTVVAIEHDAPXVXTELFVPIXYIMKFK
NXDDAFAWNNEVPQGXSXSLFXNNQXNXFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGE
KKTGGGKXSGSXSWKQYCRRXTXTIXLW*xyaxixrxxf*lklpkkknqm*lt*hk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
tsqktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sy
cnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng
*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfp
mcrtwleccnlndlr---

---EGXXXIKXQGGKVVIGGNKLXISGGNFVXPTVVAIEHDAPXVXTELFVPIXYIMKFK
NXDDAFAWNNEVPQGXSXSLFXNNQXNXFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGE
KKTGGGKXSGSXSWKQYCRRXTXTIXLW*xyaxixrxxf*lklpkkknqm*lt*hk*k

Frame B:
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMIC---

---kvxxk*kxkvvrsslvvinsxsvvetlxnqpslplnmmlxx*xlnxlfqxxt**nsk
xltmllpgimksxkvxhxpxsqtikxixsngldxpdltvx*lt*mxlxtvlklvxplevk
krpevvxnlaxtagnsiavvxlxxstygxtmplsqgixfn*nyxkkktkcnlhnink

Frame C:
ftknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikll
qllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwv
kftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsish
vpylvgmlqsq*fa---

---rxxxnkkxrw*grhww**trxqwwklcxtnrrch*t*csxxkx*txcsnxxhneiqk
x*rcfcle**spxrxxxfpxxkqskxyxqmawtxri*lwxs*rkxsyxrc*nwwxxwr*k
kdrrw*xiwlxqletvlps*x*xxxpmvxlcxyxkxsiltkitxkkkpnvtyit*ik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFK405 (CFK405Q) /CSM/CF/CFK4-A/CFK405Q.Seq.d/                       1822   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1160   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1160   0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/                       1160   0.0
SFI562 (SFI562Q) /CSM/SF/SFI5-C/SFI562Q.Seq.d/                       1160   0.0
SFH440 (SFH440Q) /CSM/SF/SFH4-B/SFH440Q.Seq.d/                       1160   0.0
SFG478 (SFG478Q) /CSM/SF/SFG4-D/SFG478Q.Seq.d/                       1160   0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/                       1160   0.0
SFE780 (SFE780Q) /CSM/SF/SFE7-D/SFE780Q.Seq.d/                       1160   0.0
SFE761 (SFE761Q) /CSM/SF/SFE7-C/SFE761Q.Seq.d/                       1160   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   771   0.0    9
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   7e-12  2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   2e-08  2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   5e-06  2
BJ550374|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence.    44   1e-05  4
BF200236|BF200236.1 WHE2254_E08_J16ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE2254_E08_J16, mRNA sequence.    52   2e-05  3
AJ615957|AJ615957.1 Triticum turgidum EST, clone 12415R.           52   4e-05  3
AJ614830|AJ614830.1 Triticum turgidum EST, clone 10801R.           52   5e-05  3
BQ806838|BQ806838.1 WHE3583_G06_M11ZS Wheat developing grains cDNA library Triticum aestivum cDNA clone WHE3583_G06_M11, mRNA sequence.    44   6e-05  4
CB209980|CB209980.1 OML00260 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence.    50   7e-05  2
dna update 2003.12. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   371   e-101
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   231   4e-59
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   228   2e-58
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   225   2e-57
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   222   2e-56
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   221   3e-56
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   219   1e-55
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   218   2e-55
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   218   4e-55
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   218   4e-55
protein update 2009. 5.17
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.63  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CFK405 is nuc
5' end seq. ID CFK405F
5' end seq. 
>CFK405F.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGNNNNNNNNNN
Length of 5' end seq. 595
3' end seq. ID CFK405Z
3' end seq. 
>CFK405Z.Seq
NNNNNNNNNNGAAGGTNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGG
TAATAAACTCGANATCAGTGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAACA
TGATGCTCCNATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAA
AAATNTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCT
NTTCNCAAACAATCAAAANAATATNTTCAAATGGCTTGGACCNACCGGATCTGACTGTGG
NATAGTTAACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGA
AAAAAAGACCGGAGGTGGTAAANAATCTGGCTCANACAGCTGGAAACAGTATTGCCGTCG
TAGNACTAANACNATCNACCTATGGTAANACTATGCCNTTATCNCAAGGNATCNATTTTA
ACTAAAATTACCNAAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAG
Length of 3' end seq. 535
Connected seq. ID CFK405P
Connected seq. 
>CFK405P.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGG----------GAAGG
TNTTNAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANAT
CAGTGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAACATGATGCTCCNATNGT
AAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGATGC
TTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCNCAAACAATCA
AAANAATATNTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTAAA
TGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGACCGGAGG
TGGTAAANAATCTGGCTCANACAGCTGGAAACAGTATTGCCGTCGTAGNACTAANACNAT
CNACCTATGGTAANACTATGCCNTTATCNCAAGGNATCNATTTTAACTAAAATTACCNAA
AAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAG
Length of connected seq. 1110
Full length Seq ID -
Full length Seq. -
Length of full length seq. -