NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFF227
Library AF
(Link to library)
Clone ID AFF227
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID AFF227P
(Link to Original site)
Representative DNA sequence 
>AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTNTTNACATNGGTNATXXXXXXXXXXTGATCAAACTGATT
TAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATTCTAATAATAATA
GTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTA
GTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGATGAAAAAGATAATGAAG
CAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATATTGTAAATA
GTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAA
GAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCATTGGCCAAA
ATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATT
TATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGG
GAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTT
ACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGT
CACAATATATGACTAATCCAAATAAATATTATTGTATACCAACTTCAACAATTTTAACTT
GGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTTTAAGAAAATAATAAAA
AAAATAAAGACAT
sequence update 2001. 6. 2
Translated Amino Acid sequence 
INAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQ
RMSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGGSSGGGSYLNSXXXGX---

---DQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQ
HDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIE
PIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLEC
NSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINI
SF*ennkknkd
Translated Amino Acid sequence (All Frames) 
Frame A:
INAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQ
RMSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGGSSGGGSYLNSXXXGX---

---*sn*fsfirny*l*fnssfkf****y***w*y***rinkk*www**i**qi*ksktt
t**kr**skw***q****kfk*kpyck***iyitii*lssfr*irkgkretrl*nhl*y*
tn*ihwpk*riig*ryyfmwfskgty*fitmsrikdkg*yslsih*kgnsiif***tfrm
*lctrtrll*ilinlfkv*ckiywfgkvtiyd*sk*illytnfnnfnld*ssfkkefnqy
fflrk**kk*rh

Frame B:
lmqk*iiiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifk
echlmelhyteiyihnlkyfkh*kktkvyqvvvvevvvvevvvi*ivxtxv---

---DQTDLALLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQ
HDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIE
PIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLEC
NSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINI
SF*ennkknkd

Frame C:
*cknel*fqkkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifnvrfsk
nvtlwsctiqkfiftt*nisnikkkqkyik*wwwrw**wrw*lfk*xxhxx---

---ikli*ly*kllimiqfii*iliiivlvvvvvlivknq*kvvvvvvnmitnikiknnn
mmkkimkqvvvvtimmmki*iktil*ivvnlhhhhliiii*mn*krkernkimksfviln
qlnslakmkdywvkilfyvvfqrnvliyhyvkn*r*rliqfihplkreqyhflminv*nv
tlyqnqvtlnph*sfqslmqnllvw*shni*liqiniivyqlqqf*lglvkfqkriqsif
lfkkiikkikt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/                       1901   0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/                       1447   0.0
CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/                       1447   0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/                       1439   0.0
AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/                       1439   0.0
AFB247 (AFB247Q) /CSM/AF/AFB2-B/AFB247Q.Seq.d/                       1409   0.0
AFE485 (AFE485Q) /CSM/AF/AFE4-D/AFE485Q.Seq.d/                       1405   0.0
CFI603 (CFI603Q) /CSM/CF/CFI6-A/CFI603Q.Seq.d/                       1403   0.0
AFB392 (AFB392Q) /CSM/AF/AFB3-D/AFB392Q.Seq.d/                       1386   0.0
SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/                       1382   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   7e-21  28
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    48   6e-18  23
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   1e-17  25
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   1e-15  20
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50   6e-15  27
AC095424|AC095424.4 Rattus norvegicus clone CH230-7A8, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    56   9e-14  11
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    46   2e-13  14
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    40   2e-13  21
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   2e-13  24
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   6e-13  24
dna update 2004. 5. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    47   0.001
AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for...    36   2.6
AM086846_1(AM086846|pid:none) Senna atomaria chloroplast partial...    35   3.4
AM086900_1(AM086900|pid:none) Senna spectabilis chloroplast part...    35   3.4
BT020861_1(BT020861|pid:none) Bos taurus ets variant gene 6 (TEL...    35   3.4
(P41212) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   4.4
DQ841178_1(DQ841178|pid:none) Homo sapiens B-cell lineage specif...    35   4.4
(Q0VC65) RecName: Full=Transcription factor ETV6;  &BC120331_1(B...    35   4.4
Z35761_1(Z35761|pid:none) Homo sapiens TEL/ABL fusion protien.         35   4.4
(P97360) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   5.7
protein update 2009. 4.19
PSORT 

 psg: 0.47  gvh: 0.26  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AFF227 is nuc
5' end seq. ID AFF227F
5' end seq. 
>AFF227F.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTNTTNACATNGGTNAT----------
Length of 5' end seq. 336
3' end seq. ID AFF227Z
3' end seq. 
>AFF227Z.Seq
----------TGATCAAACTGATTTAGCTTTATTAGAAATTATTGATTATGATTCAATTC
ATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAAT
CAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAAC
AACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATT
TAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGATTATCATC
ATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTG
AACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTG
GTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATA
CAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAAT
GTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATG
CAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAATAAATATTATTGTA
TACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATA
TTTCTTTTTAAGAAAATAATAAAAAAAATAAAGACAT
Length of 3' end seq. 747
Connected seq. ID AFF227P
Connected seq. 
>AFF227P.Seq
ATTAATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAA
GACACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGAT
TTTTCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAA
AGAATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTT
CAAACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGA
GGTGGTAGTTATTTAAATAGTNTTNACATNGGTNAT----------TGATCAAACTGATT
TAGCTTTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATTCTAATAATAATA
GTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTA
GTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGATGAAAAAGATAATGAAG
CAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATATTGTAAATA
GTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAA
GAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCATTGGCCAAA
ATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATT
TATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGG
GAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTT
ACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGT
CACAATATATGACTAATCCAAATAAATATTATTGTATACCAACTTCAACAATTTTAACTT
GGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTTTAAGAAAATAATAAAA
AAAATAAAGACAT
Length of connected seq. 1083
Full length Seq ID -
Full length Seq. -
Length of full length seq. -