AFF220
Library AF
(Link to library)
Clone ID AFF220
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13829-1
Original site URL
Representative seq. ID AFF220P
(Link to Original site)
Representative DNA sequence
>AFF220 (AFF220Q) /CSM/AF/AFF2-A/AFF220Q.Seq.d/
AATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGCAA
CTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAATT
CTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAAAA
TTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGACCA
TTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATATT
TTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTCAA
TGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTACA
TTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAACA
GAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAACTTGTTGAGAGTAGA
ATTCAACATGCTCTTAAAAATATTCCAAAAGCAAGAGCTGCTTTAACTTCTGCTCGTACA
XXXXXXXXXXCTCGTACAAATGCAAATACAATCTATTGTCCACCAAAACTTCAAGCTGAA
ATCGATATGCAATCTGGTATTTTACATTCTGAAGAAAAAGATTATAAAACTGCTTTTTCA
TACTTTTTCGAATCATATGAAACTTATGATAGTCTTGAAGATCCATTTGCAATGAAAGCA
TTAAAGTATATGTTACTTTGTAAAATTATGACCAACCAAACTGATGATGTTCATGCATTA
GTTAATGGTAAAATTGGTTTGAAATATCATAACAATAGATCCATTGAAGCAATTACTCAA
ATTTCAAAATCTCATGCAAAGAGATCACTTCATATGTTCCAAGAGGTAACCAAAGAATTT
TCTGATCAATTATCTGATGATCCAATCATTCATAGTCATTTAACTGAATTATATAGTAAT
CTTCTTGAACAAAATTTATGTCGTATTATTGAACCATTCTCAAGGGTTGAAATTTCACAT
ATTGCAAAATTAATTGATTTACCAGTTGATGTTGTTGAAAGAAAATTATCACTTATGATC
CTTGATAAGAAATATAATGGTATCCTCGATCAAGGTACTGGTACTTTAATTGTATTTGAA
GAACAAAAAGAAGATAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCGT
GTTGTNATTTACTTTANAAAAAACAAACAAACTTTCTTAAATT
sequence update 2001. 6. 2
Translated Amino Acid sequence
n*IYPHTHNIYTPKMNWKEQLEEIGNCQDSNKAIQDYNKILTIQESPDDIKEEAILRLAK
LFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQ
WCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEIQLVESR
IQHALKNIPKARAALTSART---

---RTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKAL
KYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFS
DQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMIL
DKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVIYFXKNKQTFLN


Translated Amino Acid sequence (All Frames)
Frame A:
n*IYPHTHNIYTPKMNWKEQLEEIGNCQDSNKAIQDYNKILTIQESPDDIKEEAILRLAK
LFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQ
WCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEIQLVESR
IQHALKNIPKARAALTSART---

---lvqmqiqsivhqnfklksicnlvfyilkkkiikllfhtfsnhmklmivlkihlq*kh
*sicyfvkl*ptklmmfmh*lmvklv*niitidplkqllkfqnlmqrdhficskr*pknf
linylmiqsfivi*lnyiviflnkiyvvllnhsqglkfhilqn*liyqlmllkenyhl*s
lirnimvssikvlvl*lylknkkkinylivl*kllvl*vvlxftlxktnkls*i

Frame B:
ikfihthiiyihqk*igksnlkklviakiqtklskiiikfslfknhqmilkrkqfld*qn
yl*rlvkvinyqhf*dqldhflikflnqrliksleillifsqpylii*ql*lnlskrifn
gvkiqiefi*dkd*klnflh*clkqkimqmh*ad*qhy*qklkdwminhy*lkfnllrve
fnmllkifqkqell*lllv---

---sykckynllstktss*nryaiwyftf*rkrl*ncffilfrii*nl**s*rsicnesi
kvyvtl*nydqpn**cscis*w*nwfeis*q*ih*snysnfkisckeitsyvprgnqrif
*sii**snhs*sfn*ii**ss*tkfmsyy*tilkg*nftyckin*fts*cc*kkiitydp
**ei*wyprsrywyfnci*rtkrr*ii*lffrnywcfksccxllxkkqtnflk

Frame C:
lnlstht*yiytknelerat*rnw*lprfkqsyprl**nshysritr*y*rgsns*iski
ickdw*r*sitntfkis*tif**nf*tkd**nr*kfy*yflnrt**fnnfn*icqreysm
v*ryk*nlfktkirn*tfyinv*skrlckcikrinniinrn*kig**tiis*nstc*e*n
stcs*kyskskscfnfcsy---

---RTNANTIYCPPKLQAEIDMQSGILHSEEKDYKTAFSYFFESYETYDSLEDPFAMKAL
KYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSIEAITQISKSHAKRSLHMFQEVTKEFS
DQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSRVEISHIAKLIDLPVDVVERKLSLMIL
DKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETIGALSRVVIYFXKNKQTFLN

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFF220 (AFF220Q) /CSM/AF/AFF2-A/AFF220Q.Seq.d/ 2512 0.0
AFK194 (AFK194Q) /CSM/AF/AFK1-D/AFK194Q.Seq.d/ 1356 0.0
AFB850 (AFB850Q) /CSM/AF/AFB8-C/AFB850Q.Seq.d/ 1356 0.0
CHC241 (CHC241Q) /CSM/CH/CHC2-B/CHC241Q.Seq.d/ 1354 0.0
VFK702 (VFK702Q) /CSM/VF/VFK7-A/VFK702Q.Seq.d/ 1348 0.0
SFC493 (SFC493Q) /CSM/SF/SFC4-D/SFC493Q.Seq.d/ 1348 0.0
CHB305 (CHB305Q) /CSM/CH/CHB3-A/CHB305Q.Seq.d/ 1348 0.0
AFG380 (AFG380Q) /CSM/AF/AFG3-D/AFG380Q.Seq.d/ 1348 0.0
VFO795 (VFO795Q) /CSM/VF/VFO7-D/VFO795Q.Seq.d/ 1346 0.0
VFH659 (VFH659Q) /CSM/VF/VFH6-C/VFH659Q.Seq.d/ 1346 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX488960|AX488960.1 Sequence 6260 from Patent WO02053728. 74 5e-18 3
AJ497077|AJ497077.1 Medicago truncatula EST, clone mt--abc955104c04. 68 5e-10 3
CB893586|CB893586.1 EST646378 HOGA Medicago truncatula cDNA clone HOGA-28K10, mRNA sequence. 68 8e-10 3
CG960238|CG960238.1 MBEKP41TF mth2 Medicago truncatula genomic clone 75H10, genomic survey sequence. 68 1e-09 3
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 34 3e-09 22
BE320243|BE320243.2 NF024E04RT1F1023 Developing root Medicago truncatula cDNA clone NF024E04RT 5', mRNA sequence. 68 7e-08 2
AL408021|AL408021.1 T7 end of clone AV0AA006B01 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 52 1e-07 4
AW126253|AW126253.2 N100360e rootphos(-) Medicago truncatula cDNA clone MHRP-5A2, mRNA sequence. 68 1e-07 2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 1e-07 27
CG936521|CG936521.1 MBEIO22TF mth2 Medicago truncatula genomic clone 63D19, genomic survey sequence. 68 2e-07 2
dna update 2004. 5. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54UB5) RecName: Full=26S proteasome non-ATPase regulatory subu... 771 0.0
AM424416_1(AM424416|pid:none) Vitis vinifera contig VV78X196128.... 371 e-101
BT053774_1(BT053774|pid:none) Zea mays full-length cDNA clone ZM... 370 e-101
EU969379_1(EU969379|pid:none) Zea mays clone 329471 26S proteaso... 369 e-100
AY230834_1(AY230834|pid:none) Arabidopsis thaliana 26S proteasom... 369 e-100
BT069707_1(BT069707|pid:none) Zea mays full-length cDNA clone ZM... 369 e-100
AK064788_1(AK064788|pid:none) Oryza sativa Japonica Group cDNA c... 368 e-100
A86414(A86414) hypothetical protein F28N24.15 - Arabidopsis thal... 367 e-100
AY230837_1(AY230837|pid:none) Arabidopsis thaliana 26S proteasom... 367 e-100
BT035753_1(BT035753|pid:none) Zea mays full-length cDNA clone ZM... 365 1e-99
protein update 2009. 4.19
PSORT

psg: 0.71 gvh: 0.17 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for AFF220 is nuc

5' end seq. ID AFF220F
5' end seq.
>AFF220F.Seq
AATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGCAA
CTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAATT
CTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAAAA
TTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGACCA
TTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATATT
TTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTCAA
TGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTACA
TTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAACA
GAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAACTTGTTGAGAGTAGA
ATTCAACATGCTCTTAAAAATATTCCAAAAGCAAGAGCTGCTTTAACTTCTGCTCGTACA
----------
Length of 5' end seq. 600
3' end seq. ID AFF220Z
3' end seq.
>AFF220Z.Seq
----------CTCGTACAAATGCAAATACAATCTATTGTCCACCAAAACTTCAAGCTGAA
ATCGATATGCAATCTGGTATTTTACATTCTGAAGAAAAAGATTATAAAACTGCTTTTTCA
TACTTTTTCGAATCATATGAAACTTATGATAGTCTTGAAGATCCATTTGCAATGAAAGCA
TTAAAGTATATGTTACTTTGTAAAATTATGACCAACCAAACTGATGATGTTCATGCATTA
GTTAATGGTAAAATTGGTTTGAAATATCATAACAATAGATCCATTGAAGCAATTACTCAA
ATTTCAAAATCTCATGCAAAGAGATCACTTCATATGTTCCAAGAGGTAACCAAAGAATTT
TCTGATCAATTATCTGATGATCCAATCATTCATAGTCATTTAACTGAATTATATAGTAAT
CTTCTTGAACAAAATTTATGTCGTATTATTGAACCATTCTCAAGGGTTGAAATTTCACAT
ATTGCAAAATTAATTGATTTACCAGTTGATGTTGTTGAAAGAAAATTATCACTTATGATC
CTTGATAAGAAATATAATGGTATCCTCGATCAAGGTACTGGTACTTTAATTGTATTTGAA
GAACAAAAAGAAGATAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCGT
GTTGTNATTTACTTTANAAAAAACAAACAAACTTTCTTAAATT
Length of 3' end seq. 693
Connected seq. ID AFF220P
Connected seq.
>AFF220P.Seq
AATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGCAA
CTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAATT
CTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAAAA
TTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGACCA
TTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATATT
TTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTCAA
TGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTACA
TTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAACA
GAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAACTTGTTGAGAGTAGA
ATTCAACATGCTCTTAAAAATATTCCAAAAGCAAGAGCTGCTTTAACTTCTGCTCGTACA
----------CTCGTACAAATGCAAATACAATCTATTGTCCACCAAAACTTCAAGCTGAA
ATCGATATGCAATCTGGTATTTTACATTCTGAAGAAAAAGATTATAAAACTGCTTTTTCA
TACTTTTTCGAATCATATGAAACTTATGATAGTCTTGAAGATCCATTTGCAATGAAAGCA
TTAAAGTATATGTTACTTTGTAAAATTATGACCAACCAAACTGATGATGTTCATGCATTA
GTTAATGGTAAAATTGGTTTGAAATATCATAACAATAGATCCATTGAAGCAATTACTCAA
ATTTCAAAATCTCATGCAAAGAGATCACTTCATATGTTCCAAGAGGTAACCAAAGAATTT
TCTGATCAATTATCTGATGATCCAATCATTCATAGTCATTTAACTGAATTATATAGTAAT
CTTCTTGAACAAAATTTATGTCGTATTATTGAACCATTCTCAAGGGTTGAAATTTCACAT
ATTGCAAAATTAATTGATTTACCAGTTGATGTTGTTGAAAGAAAATTATCACTTATGATC
CTTGATAAGAAATATAATGGTATCCTCGATCAAGGTACTGGTACTTTAATTGTATTTGAA
GAACAAAAAGAAGATAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCGT
GTTGTNATTTACTTTANAAAAAACAAACAAACTTTCTTAAATT
Length of connected seq. 1293
Full length Seq ID -
Full length Seq. -
Length of full length seq. -