CFK314
Library CF
(Link to library)
Clone ID CFK314
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15070-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFK314 (CFK314Q) /CSM/CF/CFK3-A/CFK314Q.Seq.d/
XXXXXXXXXXACTATTATCANTATTGATACCATTATTCTTATCATTGGTTGGATATAATG
TTTTCTTTGGTATTTTCGGAATAATCTATTATTTAATATTCATTGGATATTCATTATTTC
ATAAATTACCAGAAGACGAGAAAAAAGAAGATCGTGATATTGAAATGGGTGAAAGAAAGA
ATGGTGCAAATGAACAAACGACAGCATCAACAACAGCATCATCAACAGAATCCGACGACG
AAGACACCGATGAAGAAGATGAACATGACGAACCATTATATAAAGGTGTATTTTATTTAT
TTTTAGGTGGTCTTTTAATTTGTTACTTTAGTAAACCATTCATTGACTCAATTGTATCAT
TAGCATCATCTTGGGAAATTAATCCAATCTTATTAGCATTCTTTTTAGCTCCAATTGCTT
CAGAAATGCCTGAAATCTTAGAATCAATTTCATTATCAAGAAAAGGTCATTCTCAAAGTA
TTAATATAGCTTTTTCAAATTTAATTGGTGGTACAATAACCAAAACAACTTTATTAATGG
GTATTTTCTGTTTCTTTGGAGTTGTTAAAGGATTTGAATGGGAATCACCTACATATTCAT
TATGCTTGATATTATTGACAATTTGTGCAGCTGCAGCATCTGGTATTGGTTATTTTGTGA
ACAAGATAAAACAACAACATGGTTTAATGTTATNCGCTATTTTCTTATTAG
sequence update 2001.11.22
Translated Amino Acid sequence
---LLSXLIPLFLSLVGYNVFFGIFGIIYYLIFIGYSLFHKLPEDEKKEDRDIEMGERKN
GANEQTTASTTASSTESDDEDTDEEDEHDEPLYKGVFYLFLGGLLICYFSKPFIDSIVSL
ASSWEINPILLAFFLAPIASEMPEILESISLSRKGHSQSINIAFSNLIGGTITKTTLLMG
IFCFFGVVKGFEWESPTYSLCLILLTICAAAASGIGYFVNKIKQQHGLMLXAIFLL


Translated Amino Acid sequence (All Frames)
Frame A:
---LLSXLIPLFLSLVGYNVFFGIFGIIYYLIFIGYSLFHKLPEDEKKEDRDIEMGERKN
GANEQTTASTTASSTESDDEDTDEEDEHDEPLYKGVFYLFLGGLLICYFSKPFIDSIVSL
ASSWEINPILLAFFLAPIASEMPEILESISLSRKGHSQSINIAFSNLIGGTITKTTLLMG
IFCFFGVVKGFEWESPTYSLCLILLTICAAAASGIGYFVNKIKQQHGLMLXAIFLL


Frame B:
---yyxy*yhysyhwldimfslvfse*sii*ysldihyfinyqktrkkkivilkwvkerm
vqmnkrqhqqqhhqqnpttktpmkkmnmtnhyikvyfiyf*vvf*fvtlvnhsltqlyh*
hhlgkliqsy*hsf*lqllqkclks*nqfhyqekvilkvli*lfqi*lvvq*pkqly*wv
fsvslellkdlngnhlhihya*yy*qfvqlqhlvlvil*tr*nnnmv*cyxlfsy*


Frame C:
---iixidtiiliigwi*cflwyfrnnllfnihwifiis*itrrrekrrs*y*ng*kkew
ck*tndsinnsiinrirrrrhr*rr*t*rtii*rcilfifrwsfnlll**tih*lnciis
iilgn*snlisilfssncfrna*nlrinfiikkrsfsky*ysffkfnwwynnqnnfingy
flflwsc*ri*mgityifimldiidnlcscsiwywlfceqdktttwfnvxryfli


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFE592 (VFE592Q) /CSM/VF/VFE5-D/VFE592Q.Seq.d/ 1378 0.0
CFK315 (CFK315Q) /CSM/CF/CFK3-A/CFK315Q.Seq.d/ 1378 0.0
CFK314 (CFK314Q) /CSM/CF/CFK3-A/CFK314Q.Seq.d/ 1378 0.0
VFK405 (VFK405Q) /CSM/VF/VFK4-A/VFK405Q.Seq.d/ 1334 0.0
CFK310 (CFK310Q) /CSM/CF/CFK3-A/CFK310Q.Seq.d/ 1249 0.0
SFI661 (SFI661Q) /CSM/SF/SFI6-C/SFI661Q.Seq.d/ 1243 0.0
SFI548 (SFI548Q) /CSM/SF/SFI5-B/SFI548Q.Seq.d/ 944 0.0
SFF365 (SFF365Q) /CSM/SF/SFF3-C/SFF365Q.Seq.d/ 779 0.0
CFK409 (CFK409Q) /CSM/CF/CFK4-A/CFK409Q.Seq.d/ 454 e-127
VFF585 (VFF585Q) /CSM/VF/VFF5-D/VFF585Q.Seq.d/ 228 9e-59

own update 2001.12. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 5e-07 14
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence. 32 9e-06 14
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 38 2e-05 10
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 38 2e-05 14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 3e-05 19
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 38 8e-05 20
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 38 1e-04 14
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 1e-04 14
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 34 4e-04 14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 4e-04 13
dna update 2003.12. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE006641_2942(AE006641|pid:none) Sulfolobus solfataricus P2, com... 52 2e-05
CP000300_394(CP000300|pid:none) Methanococcoides burtonii DSM 62... 42 0.014
AE017285_2604(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 42 0.023
CP000742_384(CP000742|pid:none) Methanococcus vannielii SB, comp... 41 0.040
AE006641_1059(AE006641|pid:none) Sulfolobus solfataricus P2, com... 41 0.040
AF224509_3(AF224509|pid:none) Bacteroides cellulosolvens cellulo... 39 0.12
CP001052_3783(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 39 0.12
CP000270_4304(CP000270|pid:none) Burkholderia xenovorans LB400 c... 39 0.12
CP000155_3516(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 39 0.12
CP000644_426(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 39 0.20
protein update 2009. 5.17
PSORT

psg: 0.99 gvh: 0.52 alm: 0.25 top: 0.30 tms: 0.33 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for CFK314 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFK314Z
3' end seq.
>CFK314Z.Seq
NNNNNNNNNNACTATTATCANTATTGATACCATTATTCTTATCATTGGTTGGATATAATG
TTTTCTTTGGTATTTTCGGAATAATCTATTATTTAATATTCATTGGATATTCATTATTTC
ATAAATTACCAGAAGACGAGAAAAAAGAAGATCGTGATATTGAAATGGGTGAAAGAAAGA
ATGGTGCAAATGAACAAACGACAGCATCAACAACAGCATCATCAACAGAATCCGACGACG
AAGACACCGATGAAGAAGATGAACATGACGAACCATTATATAAAGGTGTATTTTATTTAT
TTTTAGGTGGTCTTTTAATTTGTTACTTTAGTAAACCATTCATTGACTCAATTGTATCAT
TAGCATCATCTTGGGAAATTAATCCAATCTTATTAGCATTCTTTTTAGCTCCAATTGCTT
CAGAAATGCCTGAAATCTTAGAATCAATTTCATTATCAAGAAAAGGTCATTCTCAAAGTA
TTAATATAGCTTTTTCAAATTTAATTGGTGGTACAATAACCAAAACAACTTTATTAATGG
GTATTTTCTGTTTCTTTGGAGTTGTTAAAGGATTTGAATGGGAATCACCTACATATTCAT
TATGCTTGATATTATTGACAATTTGTGCAGCTGCAGCATCTGGTATTGGTTATTTTGTGA
ACAAGATAAAACAACAACATGGTTTAATGTTATNCGCTATTTTCTTATTAG
Length of 3' end seq. 711
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -