AFF218
Library AF
(Link to library)
Clone ID AFF218
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID AFF218P
(Link to Original site)
Representative DNA sequence
>AFF218 (AFF218Q) /CSM/AF/AFF2-A/AFF218Q.Seq.d/
AATTTAAATTAACAAAGATTTTGGCGCACAGATTTCAACAAAGATTTTTTTATTAATCAA
TTCCACATGATTCAATAAAGGGGAAAATGAAATTACTTATTTTAACTTTATTTTTAGCTA
CTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAAT
CTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTACCA
CAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTACCC
CAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAA
AGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGCCT
CAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTATGT
CAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATTAT
TCGCTGAAGCCACTGCXXXXXXXXXXCTGGTTATCAAGAACTCCAGGTGCCAACGGTGGT
GAACTCTCATTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCTACGTCCCA
TTAACCAACGAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATGGTCAATCA
GCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCACTCATTGCT
GGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCTTAAATGGT
GAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCATCACCGTT
GCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAAGTTACTGAGTTCGGA
AAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTCTGGATC
CTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATAAACAAGTT
GGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATTAATTTATATTTAAGNATAGAA
ATAAAACTAAATAATAGAACAATATATGTGNCATTGTTTTTTTTT
sequence update 2001. 6. 2
Translated Amino Acid sequence
fkltkilahrfqqrffy*SIPHDSIKGKMKLLILTLFLATIVLAQALTVPLNFHQASRES
RRRVPQKWSNRLSALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSK
KCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLF
AEAT---

---WLSRTPGANGGELSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGT
TCHAICDSGTSLIAGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFV
LTPKEYVLEVTEFGKTECLSGFMGIELNMGNFWILGDVFISAYYTVFDFGNKQVGFATAI
QG*iflinlylxieiklnnrtiyvxlfff


Translated Amino Acid sequence (All Frames)
Frame A:
nln*qrfwrtdfnkdffinqfhmiq*rgk*nylf*lyf*lllf*lkl*qyh*tsiklqen
leeefhkngqtdyllsmlvpqsqfqilkmlntmvplplvpqvkpsk*fsilvhptcgfhq
rnvqslllhviyitnitavpqahmsptelispsntvvvlcqvlslkipsllvh*llkiny
slkpl---

---lviknsrcqrw*tlirfnr*hqihw*hylrpinqrnllgiryg*lcyrwsiswflwy
ylsrnlrfryithcwsng*yycpq*kircchlkw*rcll*l*ryqhltkcyhhrcws*ic
fnskrirfrsy*vrkd*mfewiygyrvkhgkfldpw*cfhlcllycirfw**tswfrnch
srlnffn*fifkxrnktk**nnicxivff

Frame B:
i*inkdfgaqistkifllinst*fnkgeneityfnfifsyycfsssfnstiklpssfkri
*kksstkmvkqiicsqcwyhnpnfrf*rcsilwchyhwyprsslqssfrywfiqlvdsik
emsnhcccm*ft*qi*qrclkhicrqrn*fhhpir*wcyvrfclsrfrhcwfinc*rsii
r*shc---

---WLSRTPGANGGELSFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGT
TCHAICDSGTSLIAGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFV
LTPKEYVLEVTEFGKTECLSGFMGIELNMGNFWILGDVFISAYYTVFDFGNKQVGFATAI
QG*iflinlylxieiklnnrtiyvxlfff

Frame C:
fkltkilahrfqqrffy*SIPHDSIKGKMKLLILTLFLATIVLAQALTVPLNFHQASRES
RRRVPQKWSNRLSALNAGTTIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSK
KCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLF
AEAT---

---gyqelqvptvvnshsvqsitpntlvtlptsh*ptkpignslwmtllsmvnqlvsvvl
lvtqfaiqvhhsllvqwlillpsmkn*vlss*mvkvsslivalstpyqmlpspllvvnlf
*lqkntf*kllsserlnv*vdlwvss*tweisgslvmfsslltilysilvinklvsqlpf
kvkff*liyi*x*k*n*iieqymxhcff

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFF218 (AFF218Q) /CSM/AF/AFF2-A/AFF218Q.Seq.d/ 2177 0.0
VFN427 (VFN427Q) /CSM/VF/VFN4-B/VFN427Q.Seq.d/ 1156 0.0
VFN169 (VFN169Q) /CSM/VF/VFN1-C/VFN169Q.Seq.d/ 1156 0.0
VFM107 (VFM107Q) /CSM/VF/VFM1-A/VFM107Q.Seq.d/ 1156 0.0
VFH834 (VFH834Q) /CSM/VF/VFH8-B/VFH834Q.Seq.d/ 1156 0.0
VFG865 (VFG865Q) /CSM/VF/VFG8-C/VFG865Q.Seq.d/ 1156 0.0
VFB852 (VFB852Q) /CSM/VF/VFB8-C/VFB852Q.Seq.d/ 1156 0.0
AFH170 (AFH170Q) /CSM/AF/AFH1-C/AFH170Q.Seq.d/ 1156 0.0
AFD366 (AFD366Q) /CSM/AF/AFD3-C/AFD366Q.Seq.d/ 1156 0.0
AFC250 (AFC250Q) /CSM/AF/AFC2-C/AFC250Q.Seq.d/ 1156 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D. 1074 0.0 3
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2. 1074 0.0 3
AB106552|AB106552.1 Todarodes pacificus tpaD mRNA for cathepsin D, complete cds. 58 1e-05 2
CB264579|CB264579.1 51-E015023-035-004-F13-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000F134Q 5-PRIME, mRNA sequence. 62 2e-05 1
AL161500|AL161500.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12. 62 2e-05 1
AL765461|AL765461.1 Arabidopsis thaliana T-DNA flanking sequence GK-139E08-012875. 62 2e-05 1
AL762930|AL762930.1 Arabidopsis thaliana T-DNA flanking sequence GK-030C11-011522. 62 2e-05 1
AV567523|AV567523.1 Arabidopsis thaliana cDNA clone:SQL15g03F, 3' end. 62 2e-05 1
AF372974|AF372974.1 Arabidopsis thaliana AT4g04460/T26N6_7 mRNA, complete cds. 62 2e-05 1
AF076243|AF076243.1 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence. 62 2e-05 1
dna update 2004. 5. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC154324_1(BC154324|pid:none) Danio rerio zgc:63831, mRNA (cDNA ... 147 6e-68
BC056836_1(BC056836|pid:none) Danio rerio zgc:63831, mRNA (cDNA ... 146 1e-67
(Q800A0) RecName: Full=Cathepsin E; EC=3.4.23.34; Flags... 150 4e-62
DQ256465_1(DQ256465|pid:none) Schistosoma mansoni cathepsin D2-l... 129 9e-60
AY361913_1(AY361913|pid:none) Botryotinia fuckeliana aspartic pr... 140 1e-55
J02941_1(J02941|pid:none) Rat renin mRNA, complete cds. 131 6e-52
X07033_1(X07033|pid:none) Rat mRNA for renin (EC 3.4.23.15). 131 8e-52
(P00796) RecName: Full=Renin-2; EC=3.4.23.15; AltName: ... 128 2e-51
J00621_1(J00621|pid:none) Mus musculus renin mRNA, complete cds. 127 2e-51
AY102037_1(AY102037|pid:none) Mus musculus transgenic synthetic ... 127 3e-51
protein update 2009. 4.19
PSORT

psg: 0.86 gvh: 0.77 alm: 0.42 top: 0.60 tms: 0.00 mit: 0.32 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: extracellular, including cell wall
24.0 %: nuclear
20.0 %: mitochondrial
12.0 %: cytoplasmic
8.0 %: vacuolar
4.0 %: cytoskeletal

>> prediction for AFF218 is exc

5' end seq. ID AFF218F
5' end seq.
>AFF218F.Seq
AATTTAAATTAACAAAGATTTTGGCGCACAGATTTCAACAAAGATTTTTTTATTAATCAA
TTCCACATGATTCAATAAAGGGGAAAATGAAATTACTTATTTTAACTTTATTTTTAGCTA
CTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAAT
CTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTACCA
CAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTACCC
CAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAA
AGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGCCT
CAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTATGT
CAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATTAT
TCGCTGAAGCCACTGC----------
Length of 5' end seq. 556
3' end seq. ID AFF218Z
3' end seq.
>AFF218Z.Seq
----------CTGGTTATCAAGAACTCCAGGTGCCAACGGTGGTGAACTCTCATTCGGTT
CAATCGATAACACCAAATACACTGGTGACATTACCTACGTCCCATTAACCAACGAAACCT
ATTGGGAATTCGTTATGGATGACTTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTA
CTACTTGTCACGCAATTTGCGATTCAGGTACATCACTCATTGCTGGTCCAATGGCTGATA
TTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTG
ATTGTAGCGTTATCAACACCTTACCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTG
TTTTAACTCCAAAAGAATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGA
GTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCA
TCTCTGCTTACTATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCA
TTCAAGGTTAAATTTTTTTAATTAATTTATATTTAAGNATAGAAATAAAACTAAATAATA
GAACAATATATGTGNCATTGTTTTTTTTT
Length of 3' end seq. 619
Connected seq. ID AFF218P
Connected seq.
>AFF218P.Seq
AATTTAAATTAACAAAGATTTTGGCGCACAGATTTCAACAAAGATTTTTTTATTAATCAA
TTCCACATGATTCAATAAAGGGGAAAATGAAATTACTTATTTTAACTTTATTTTTAGCTA
CTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAAT
CTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTACCA
CAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTACCC
CAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAA
AGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGCCT
CAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTATGT
CAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATTAT
TCGCTGAAGCCACTGC----------CTGGTTATCAAGAACTCCAGGTGCCAACGGTGGT
GAACTCTCATTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCTACGTCCCA
TTAACCAACGAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATGGTCAATCA
GCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCACTCATTGCT
GGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCTTAAATGGT
GAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCATCACCGTT
GCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAAGTTACTGAGTTCGGA
AAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTCTGGATC
CTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATAAACAAGTT
GGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATTAATTTATATTTAAGNATAGAA
ATAAAACTAAATAATAGAACAATATATGTGNCATTGTTTTTTTTT
Length of connected seq. 1175
Full length Seq ID -
Full length Seq. -
Length of full length seq. -