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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFK232
Library CF
(Link to library)
Clone ID CFK232
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08304-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFK232 (CFK232Q) /CSM/CF/CFK2-B/CFK232Q.Seq.d/
XXXXXXXXXXGTATTTTNAAACAAAATNTTTTGGATGATATGGNTATCNTTATCAATCCN
AAGGTTGCTGATGGNAAAAANATCATTCNATTGGANANTGCTNNTGGNGCTGCAANTNAA
TTNTTTNACAATNCAANAGGNGNCAA
sequence update 2001.11.22
Translated Amino Acid sequence 
---IXKQNXLDDMXIXINPKVADGKXIIXLXXAXGAAXXXFXNXXGX
Translated Amino Acid sequence (All Frames) 
Frame A:
---yfxtkxfg*ygyxyqsxgc*wxkxhsigxcxwxcxxixxqxxrxq


Frame B:
---IXKQNXLDDMXIXINPKVADGKXIIXLXXAXGAAXXXFXNXXGX


Frame C:
---fxnkxfwmiwxslsixrllmxkxsfxwxxlxxlqxnxxtxqxxx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB181 (VFB181Q) /CSM/VF/VFB1-D/VFB181Q.Seq.d/                        109   1e-23
SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/                        109   1e-23
SFL487 (SFL487Q) /CSM/SF/SFL4-D/SFL487Q.Seq.d/                        109   1e-23
SFL292 (SFL292Q) /CSM/SF/SFL2-D/SFL292Q.Seq.d/                        109   1e-23
SFL232 (SFL232Q) /CSM/SF/SFL2-B/SFL232Q.Seq.d/                        109   1e-23
SFL171 (SFL171Q) /CSM/SF/SFL1-C/SFL171Q.Seq.d/                        109   1e-23
SFJ475 (SFJ475Q) /CSM/SF/SFJ4-D/SFJ475Q.Seq.d/                        109   1e-23
SFI770 (SFI770Q) /CSM/SF/SFI7-C/SFI770Q.Seq.d/                        109   1e-23
SFI168 (SFI168Q) /CSM/SF/SFI1-C/SFI168Q.Seq.d/                        109   1e-23
SFI134 (SFI134Q) /CSM/SF/SFI1-B/SFI134Q.Seq.d/                        109   1e-23
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L28007|L28007.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP2) gene, partial cds.    98   4e-17  1
AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.    98   4e-17  1
dna update 2001.12. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...    53   4e-06
L28007_1(L28007|pid:none) Dictyostelium discoideum UDP-glucose p...    48   9e-05
protein update 2008.12.30
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CFK232 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFK232Z
3' end seq. 
>CFK232Z.Seq
NNNNNNNNNNGTATTTTNAAACAAAATNTTTTGGATGATATGGNTATCNTTATCAATCCN
AAGGTTGCTGATGGNAAAAANATCATTCNATTGGANANTGCTNNTGGNGCTGCAANTNAA
TTNTTTNACAATNCAANAGGNGNCAA
Length of 3' end seq. 146
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -