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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFK229
Library CF
(Link to library)
Clone ID CFK229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID CFK229P
(Link to Original site)
Representative DNA sequence 
>CFK229 (CFK229Q) /CSM/CF/CFK2-B/CFK229Q.Seq.d/
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXXXXXXXTGATANNATATG
TACNCNANTAATGNCAAATGTTTAGTANAATCTTGTNAAATAGGTTTTGGNTGTCNTGCA
ATTNCAAANAATTGTAATGATAATGATCCATGTANCANTGATCANTGTGATCCAGNTATA
GGTTGTTATTATNATAAGTTTGATAATTGTNATGCATGTAATNCTGTANATACTTGTATN
ACAAATGATTTATGCTTNCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATA
ANCCCTATTAATTGNCAAGCANTGATCCATGCATTTTTTCATATTGTGAAAATGGTGTAT
GTATTNCAACATACATTTGTACTNCAACTCCATCTGTAACTNCANCTGTTACCNCANCTG
NTACTNNANCTGTTACCCC
sequence update 2001.11.22
Translated Amino Acid sequence 
yehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---DXICTXXMXNV*xnlvk*vlxvxqxqxivmimihvxxixviqx*vvixisliivmhv
xlxilvxqmiyaxqgnviqegthlv**xllixkx*smhffil*kwcmyxnihlyxnsicn
xxcyxxxyxxcyp
Translated Amino Acid sequence (All Frames) 
Frame A:
i*tfnk*ntikiniiyifivtlyeylkigkhflkigkhy*kkk*idf*l*kk---

---*xxmyxxnxkclvxscxigfgcxaixxncndndpcxxdxcdpxigcyyxkfdncxac
nxvxtcxtndlcxprecnprgnppclixpinxqaxihaffhivkmvyvxqhtfvlqlhl*
lxllpxlxlxllp

Frame B:
yehlinktq*ksilfiyl**hymni*klenif*KLENIIKKRNKLIFNYKKK---

---DXICTXXMXNV*xnlvk*vlxvxqxqxivmimihvxxixviqx*vvixisliivmhv
xlxilvxqmiyaxqgnviqegthlv**xllixkx*smhffil*kwcmyxnihlyxnsicn
xxcyxxxyxxcyp

Frame C:
mni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikkk---

---ixyvxx*xqmfsxilxnrfwxscnxkxl****smxx*sx*sxyrlllx*v**lxcm*
xcxylyxk*fmlxkgm*skreptlfnxpy*lxsxdpcifsycengvcixtyictxtpsvt
xxvtxxxtxxvt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFK229 (CFK229Q) /CSM/CF/CFK2-B/CFK229Q.Seq.d/                        567   e-161
CHH341 (CHH341Q) /CSM/CH/CHH3-B/CHH341Q.Seq.d/                        543   e-154
CHD753 (CHD753Q) /CSM/CH/CHD7-C/CHD753Q.Seq.d/                        543   e-154
CHC630 (CHC630Q) /CSM/CH/CHC6-B/CHC630Q.Seq.d/                        543   e-154
CFF487 (CFF487Q) /CSM/CF/CFF4-D/CFF487Q.Seq.d/                        543   e-154
CFF194 (CFF194Q) /CSM/CF/CFF1-D/CFF194Q.Seq.d/                        543   e-154
CFC857 (CFC857Q) /CSM/CF/CFC8-C/CFC857Q.Seq.d/                        543   e-154
CFB308 (CFB308Q) /CSM/CF/CFB3-A/CFB308Q.Seq.d/                        543   e-154
CFB225 (CFB225Q) /CSM/CF/CFB2-B/CFB225Q.Seq.d/                        543   e-154
AFN818 (AFN818Q) /CSM/AF/AFN8-A/AFN818Q.Seq.d/                        543   e-154
own update 2002. 9.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CE707845|CE707845.1 tigr-gss-dog-17000369256437 Dog Library Canis familiaris genomic, genomic survey sequence.    40   4e-04  2
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    34   5e-04  9
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    34   0.001  10
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    40   0.009  9
AX349036|AX349036.1 Sequence 494 from Patent WO0202807.            40   0.009  4
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   0.009  8
CF342629|CF342629.1 AGENCOURT_15224176 NICHD_XGC_Swb1 Silurana tropicalis cDNA clone IMAGE:7000111 5', mRNA sequence.    40   0.016  2
CF342630|CF342630.1 AGENCOURT_15224162 NICHD_XGC_Swb1 Silurana tropicalis cDNA clone IMAGE:7000111 5', mRNA sequence.    40   0.017  2
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.017  7
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   0.020  14
dna update 2003.12. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                151   9e-36
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 60   5e-10
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 59   6e-08
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 58   1e-07
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 57   4e-07
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 53   5e-06
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    47   3e-04
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    45   0.001
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    45   0.002
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    44   0.002
protein update 2008.12.30
PSORT 

 psg: 0.52  gvh: 0.12  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CFK229 is nuc
5' end seq. ID CFK229F
5' end seq. 
>CFK229F.Seq
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 168
3' end seq. ID CFK229Z
3' end seq. 
>CFK229Z.Seq
NNNNNNNNNNTGATANNATATGTACNCNANTAATGNCAAATGTTTAGTANAATCTTGTNA
AATAGGTTTTGGNTGTCNTGCAATTNCAAANAATTGTAATGATAATGATCCATGTANCAN
TGATCANTGTGATCCAGNTATAGGTTGTTATTATNATAAGTTTGATAATTGTNATGCATG
TAATNCTGTANATACTTGTATNACAAATGATTTATGCTTNCCAAGGGAATGTAATCCAAG
AGGGAACCCACCTTGTTTAATAANCCCTATTAATTGNCAAGCANTGATCCATGCATTTTT
TCATATTGTGAAAATGGTGTATGTATTNCAACATACATTTGTACTNCAACTCCATCTGTA
ACTNCANCTGTTACCNCANCTGNTACTNNANCTGTTACCCC
Length of 3' end seq. 401
Connected seq. ID CFK229P
Connected seq. 
>CFK229P.Seq
ATATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTA
ACATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAA
AAAAAGAAATAAATTGATTTTTAATTATAAAAAAAAAA----------TGATANNATATG
TACNCNANTAATGNCAAATGTTTAGTANAATCTTGTNAAATAGGTTTTGGNTGTCNTGCA
ATTNCAAANAATTGTAATGATAATGATCCATGTANCANTGATCANTGTGATCCAGNTATA
GGTTGTTATTATNATAAGTTTGATAATTGTNATGCATGTAATNCTGTANATACTTGTATN
ACAAATGATTTATGCTTNCCAAGGGAATGTAATCCAAGAGGGAACCCACCTTGTTTAATA
ANCCCTATTAATTGNCAAGCANTGATCCATGCATTTTTTCATATTGTGAAAATGGTGTAT
GTATTNCAACATACATTTGTACTNCAACTCCATCTGTAACTNCANCTGTTACCNCANCTG
NTACTNNANCTGTTACCCC
Length of connected seq. 549
Full length Seq ID -
Full length Seq. -
Length of full length seq. -