>CFK203 (CFK203Q) /CSM/CF/CFK2-A/CFK203Q.Seq.d/
XXXXXXXXXXTTCTTTGATGAGTTGGATAGTATTGCACGTTNTANAGGTTCATCACAAGG
TGATGCTGGTGGTGCTGGTGATANAGTTATCAATCAAATTTTAACTGAAATGGATGGTAT
GAACGCCAAGAAGAACGTTTTCATCATTGGTGCTACCAATAGACCAGATATCATCGATCC
AGCTATCCTCCGTCCAGGTCGTTTAGATCAACTCATTTACATTCCATTACCAGATTTACC
ATCTCGTGTTGCCATTNTCAAGGCTTGTNTCAATAAATCACCAGTCGCCAAGGATGTAGA
TTTANAATTTTTGGGTCAAAAGACTCAAGGTTTNTCTGGTGCAGATTTAACTGAAATTTG
TCAACGNGCCTGTAAATTAGCTATTCGTGAATCCATTGAAAAGGATATTGAATCCACCAA
AGCCCGTCAAGAATCTGGTGATACCAAGATGGAAGATGACTCTGTCGATCCAGNACCAGA
AATTACTCGTGATCACTTCCAANAAGCCATGAGATCTGCTCGTCGTTCTGNATCCGATAA
TGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAAGAGGTCTTGGTAA
TAATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAAGATCAATCCNANAT
CTTTTCAGGAATTAAAAAAAAAAA

---FDELDSIARXXGSSQGDAGGAGDXVINQILTEMDGMNAKKNVFIIGATNRPDIIDPA
ILRPGRLDQLIYIPLPDLPSRVAIXKACXNKSPVAKDVDLXFLGQKTQGXSGADLTEICQ
RACKLAIRESIEKDIESTKARQESGDTKMEDDSVDPXPEITRDHFQXAMRSARRSXSDND
IRKYESFAQTLVQSRGLGNNFKFPDQESSGQFNQDQSXIFSGIKKK

Frame A:
---slmswivlhvxxvhhkvmlvvlvixlsikf*lkwmv*tprrtfsslvlpidqissiq
lssvqvv*insftfhyqiyhlvlpxsrlvsinhqsprm*ixnfwvkrlkvxlvqi*lkfv
nxpvn*lfvnplkrilnppkpvknlviprwkmtlsiqxqkllvitsxkp*dllvvlxpim
ilenmkallkl*fnqevlviisnsqiknlqvnsikinpxsfqelkkk


Frame B:
---l**vg*yctxxrfitr*cwwcw*xsyqsnfn*ngwyerqeerfhhwcyq*tryhrss
yppsrsfrsthlhsitrftiscchxqglxq*itsrqgcrfxifgskdsrfxwcrfn*nls
txl*isys*ih*kgy*ihqspsriw*yqdgr*lcrsxtrnys*slpxsheicssfxir**
y*ki*klcsnfssikrsw**fqiprsrifrsiqsrsixxlfrn*kkk


Frame C:
---FDELDSIARXXGSSQGDAGGAGDXVINQILTEMDGMNAKKNVFIIGATNRPDIIDPA
ILRPGRLDQLIYIPLPDLPSRVAIXKACXNKSPVAKDVDLXFLGQKTQGXSGADLTEICQ
RACKLAIRESIEKDIESTKARQESGDTKMEDDSVDPXPEITRDHFQXAMRSARRSXSDND
IRKYESFAQTLVQSRGLGNNFKFPDQESSGQFNQDQSXIFSGIKKK

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFK203 (CFK203Q) /CSM/CF/CFK2-A/CFK203Q.Seq.d/                       1237   0.0
AHL112 (AHL112Q) /CSM/AH/AHL1-A/AHL112Q.Seq.d/                       1211   0.0
VSI623 (VSI623Q) /CSM/VS/VSI6-A/VSI623Q.Seq.d/                       1205   0.0
AHI573 (AHI573Q) /CSM/AH/AHI5-D/AHI573Q.Seq.d/                       1199   0.0
VHJ302 (VHJ302Q) /CSM/VH/VHJ3-A/VHJ302Q.Seq.d/                       1197   0.0
AFH318 (AFH318Q) /CSM/AF/AFH3-A/AFH318Q.Seq.d/                       1197   0.0
VHL102 (VHL102Q) /CSM/VH/VHL1-A/VHL102Q.Seq.d/                       1187   0.0
SFF423 (SFF423Q) /CSM/SF/SFF4-A/SFF423Q.Seq.d/                       1187   0.0
VHP286 (VHP286Q) /CSM/VH/VHP2-D/VHP286Q.Seq.d/                       1181   0.0
CHI521 (CHI521Q) /CSM/CH/CHI5-A/CHI521Q.Seq.d/                       1181   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83085|U83085.2 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds.  1211   0.0    1
CB814564|CB814564.1 USDA-FP_100042 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-01_D12 5', mRNA sequence.   131   1e-26  1
BI505199|BI505199.1 BB170019B10G02 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019B10G02 5', mRNA sequence.    60   3e-26  4
BE579889|BE579889.1 kq34a03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:C41C4.8 CE05402 TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE HOMOLOG 2 ;, mRNA sequence.    78   4e-26  3
AL440049|AL440049.1 T7 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of  Candida tropicalis.   115   2e-24  2
AL440050|AL440050.1 T3 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of  Candida tropicalis.   109   1e-22  2
CF588183|CF588183.1 USDA-FP_121400-098 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP-011_E12 5', mRNA sequence.   103   1e-22  2
Z49886|Z49886.1 Caenorhabditis elegans cosmid C06A1.               78   1e-19  5
BI505437|BI505437.1 BB170025B10F03 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170025B10F03 5', mRNA sequence.    68   9e-19  3
BJ152352|BJ152352.1 Caenorhabditis elegans cDNA clone:yk1306c01 : 3' end, single read.   101   1e-18  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division...   360   2e-98
(P54811) RecName: Full=Transitional endoplasmic reticulum ATPase...   263   3e-69
(P54812) RecName: Full=Transitional endoplasmic reticulum ATPase...   263   3e-69
BC114306_1(BC114306|pid:none) Danio rerio zgc:136908, mRNA (cDNA...   259   4e-68
AB248089_1(AB248089|pid:none) Haemaphysalis longicornis VCP gene...   258   1e-67
(Q7KN62) RecName: Full=Transitional endoplasmic reticulum ATPase...   255   7e-67
AE013599_1006(AE013599|pid:none) Drosophila melanogaster chromos...   255   7e-67
AF047037_1(AF047037|pid:none) Drosophila melanogaster transition...   253   3e-66
AK167794_1(AK167794|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   253   4e-66
AK083821_1(AK083821|pid:none) Mus musculus 12 days embryo spinal...   253   4e-66

 psg: 0.75  gvh: 0.44  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CFK203 is nuc

>CFK203Z.Seq
NNNNNNNNNNTTCTTTGATGAGTTGGATAGTATTGCACGTTNTANAGGTTCATCACAAGG
TGATGCTGGTGGTGCTGGTGATANAGTTATCAATCAAATTTTAACTGAAATGGATGGTAT
GAACGCCAAGAAGAACGTTTTCATCATTGGTGCTACCAATAGACCAGATATCATCGATCC
AGCTATCCTCCGTCCAGGTCGTTTAGATCAACTCATTTACATTCCATTACCAGATTTACC
ATCTCGTGTTGCCATTNTCAAGGCTTGTNTCAATAAATCACCAGTCGCCAAGGATGTAGA
TTTANAATTTTTGGGTCAAAAGACTCAAGGTTTNTCTGGTGCAGATTTAACTGAAATTTG
TCAACGNGCCTGTAAATTAGCTATTCGTGAATCCATTGAAAAGGATATTGAATCCACCAA
AGCCCGTCAAGAATCTGGTGATACCAAGATGGAAGATGACTCTGTCGATCCAGNACCAGA
AATTACTCGTGATCACTTCCAANAAGCCATGAGATCTGCTCGTCGTTCTGNATCCGATAA
TGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAAGAGGTCTTGGTAA
TAATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAAGATCAATCCNANAT
CTTTTCAGGAATTAAAAAAAAAAA