NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFK160
Library CF
(Link to library)
Clone ID CFK160
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID CFK160P
(Link to Original site)
Representative DNA sequence 
>CFK160 (CFK160Q) /CSM/CF/CFK1-C/CFK160Q.Seq.d/
GTGGTGCATGCCTATATGAGCCAATAGCCAATTGTGTTAATTGTGGTGGAAATCAATGTA
TAACAACTGATTTTTGTTTACCATTAATTTGTGGACCTGATGGTGTTACTTGTGCTGTTG
AACCAAAGAAATGTGATGATTTTAACCCATGTACTTTTGATTCTTGTATTTCTCCTCAAG
GTGATTGTGGTAATGCACCAATTCCAGGTTGTGTAGCATGTAATGAAATTCTTGGATGTA
CTACAACTGATCCATGTCACCCAATTACTTGTTCAGCCATAGGTGATCAATGTGTGTCAA
CTGATAAAGATTGTGAAGATGGAAATCATTGTACAATTAACTCTTGTCAAAATAATAATG
GAACTGCTACATGTTTAAATTCATTGATTACCCATTGTACTGATTGCCCAGGAATTGGAT
GTACTACTACAGATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTTTGTA
CAAXXXXXXXXXXGTTGTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACT
GAAGATAAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACA
CCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTT
GAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGT
ATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACA
ACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGAT
AGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTA
CCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTC
ACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAA
TCATGTTGTAAATTCACACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTA
AAATTAATATATTATTTCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAA
GTCAACTAATCTCAATTTAATATTACAATATAAACANTAAGTTTA
sequence update 2001.11.22
Translated Amino Acid sequence 
GACLYEPIANCVNCGGNQCITTDFCLPLICGPDGVTCAVEPKKCDDFNPCTFDSCISPQG
DCGNAPIPGCVACNEILGCTTTDPCHPITCSAIGDQCVSTDKDCEDGNHCTINSCQNNNG
TATCLNSLITHCTDCPGIGCTTTDFCFQQVCSATDGDVCT---

---CLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVEC
DCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRY
HCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESC
CKFTPVCKPKGHSL*kklkliyyffsfyyifllkfynqvn*sqfniti*txsl
Translated Amino Acid sequence (All Frames) 
Frame A:
vvhaymsq*pivlivveinv*qlifvyh*fvdlmvllvllnqrnvmilthvllilvfllk
vivvmhqfqvv*hvmkfldvlqlihvtqllvqp*vinvcqlikivkmeiivqltlvkiim
ellhv*ih*lpivliaqeldvllqifasnkfalqlmemfvq---

---vvlqwf*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhkls
vivvqlvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvid
iivkeewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnh
vvnshqfanqkdthfkkn*n*yiisflfiiyfy*nfitkstnlnlilqykx*v

Frame B:
wcmpi*ansqlc*lwwksmynn*flftinlwt*wcylcc*tkem**f*pmyf*flyfssr
*lw*ctnsrlcsm**nswmyyn*smspnylfshr*smcvn**rl*rwkslyn*llsk**w
ncymfkfidyply*lprnwmyyyrfllptsllcn*wrcly---

---lsyngfkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v
*llsnwskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**i
sl*krngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*im
l*ihtslqtkrtltlkktkinilflffllyifikil*psqlisi*yyninxkf

Frame C:
GACLYEPIANCVNCGGNQCITTDFCLPLICGPDGVTCAVEPKKCDDFNPCTFDSCISPQG
DCGNAPIPGCVACNEILGCTTTDPCHPITCSAIGDQCVSTDKDCEDGNHCTINSCQNNNG
TATCLNSLITHCTDCPGIGCTTTDFCFQQVCSATDGDVCT---

---CLTMVLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVEC
DCCPIGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRY
HCKRGMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESC
CKFTPVCKPKGHSL*kklkliyyffsfyyifllkfynqvn*sqfniti*txsl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFK160 (CFK160Q) /CSM/CF/CFK1-C/CFK160Q.Seq.d/                       2060   0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                       1142   0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/                       1142   0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/                       1142   0.0
SHG326 (SHG326Q) /CSM/SH/SHG3-B/SHG326Q.Seq.d/                       1142   0.0
SHF835 (SHF835Q) /CSM/SH/SHF8-B/SHF835Q.Seq.d/                       1142   0.0
SHF242 (SHF242Q) /CSM/SH/SHF2-B/SHF242Q.Seq.d/                       1142   0.0
SHC693 (SHC693Q) /CSM/SH/SHC6-D/SHC693Q.Seq.d/                       1142   0.0
SHB522 (SHB522Q) /CSM/SH/SHB5-A/SHB522Q.Seq.d/                       1142   0.0
SHB423 (SHB423Q) /CSM/SH/SHB4-A/SHB423Q.Seq.d/                       1142   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC146549|AC146549.5 Medicago truncatula clone mth2-7p18, WORKING DRAFT SEQUENCE, 3 ordered pieces.    38   0.049  4
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   0.086  4
AC025368|AC025368.1 Homo sapiens chromosome 13 clone RP11-270C9 map 13, LOW-PASS SEQUENCE SAMPLING.    40   0.12   3
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    36   0.13   9
AC112404|AC112404.5 Rattus norvegicus clone CH230-107P3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38   0.14   6
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    42   0.17   8
AC122160|AC122160.15 Medicago truncatula clone mth2-23d6, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.34   9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   0.51   13
AF160181|AF160181.1 Arabidopsis thaliana BAC T14A16.               42   0.52   2
AL139082|AL139082.18 Human DNA sequence from clone RP11-248G5 on chromosome 13q14.3-21.1.    34   0.67   7
dna update 2003.12. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                370   e-126
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                202   7e-84
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    83   6e-18
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    76   4e-17
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    70   4e-16
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    69   3e-15
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    69   2e-14
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 66   6e-14
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 77   2e-12
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 76   2e-12
protein update 2009. 5.16
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFK160 is cyt
5' end seq. ID CFK160F
5' end seq. 
>CFK160F.Seq
GTGGTGCATGCCTATATGAGCCAATAGCCAATTGTGTTAATTGTGGTGGAAATCAATGTA
TAACAACTGATTTTTGTTTACCATTAATTTGTGGACCTGATGGTGTTACTTGTGCTGTTG
AACCAAAGAAATGTGATGATTTTAACCCATGTACTTTTGATTCTTGTATTTCTCCTCAAG
GTGATTGTGGTAATGCACCAATTCCAGGTTGTGTAGCATGTAATGAAATTCTTGGATGTA
CTACAACTGATCCATGTCACCCAATTACTTGTTCAGCCATAGGTGATCAATGTGTGTCAA
CTGATAAAGATTGTGAAGATGGAAATCATTGTACAATTAACTCTTGTCAAAATAATAATG
GAACTGCTACATGTTTAAATTCATTGATTACCCATTGTACTGATTGCCCAGGAATTGGAT
GTACTACTACAGATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTTTGTA
CAANNNNNNNNNN
Length of 5' end seq. 493
3' end seq. ID CFK160Z
3' end seq. 
>CFK160Z.Seq
NNNNNNNNNNGTTGTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACTGAA
GATAAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCA
TCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAG
TGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATT
AAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACT
GGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGA
TATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCA
TCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACC
TGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCA
TGTTGTAAATTCACACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAA
TTAATATATTATTTCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTC
AACTAATCTCAATTTAATATTACAATATAAACANTAAGTTTA
Length of 3' end seq. 702
Connected seq. ID CFK160P
Connected seq. 
>CFK160P.Seq
GTGGTGCATGCCTATATGAGCCAATAGCCAATTGTGTTAATTGTGGTGGAAATCAATGTA
TAACAACTGATTTTTGTTTACCATTAATTTGTGGACCTGATGGTGTTACTTGTGCTGTTG
AACCAAAGAAATGTGATGATTTTAACCCATGTACTTTTGATTCTTGTATTTCTCCTCAAG
GTGATTGTGGTAATGCACCAATTCCAGGTTGTGTAGCATGTAATGAAATTCTTGGATGTA
CTACAACTGATCCATGTCACCCAATTACTTGTTCAGCCATAGGTGATCAATGTGTGTCAA
CTGATAAAGATTGTGAAGATGGAAATCATTGTACAATTAACTCTTGTCAAAATAATAATG
GAACTGCTACATGTTTAAATTCATTGATTACCCATTGTACTGATTGCCCAGGAATTGGAT
GTACTACTACAGATTTTTGCTTCCAACAAGTTTGCTCTGCAACTGATGGAGATGTTTGTA
CAA----------GTTGTCTTACAATGGTTTTAAATTGTGATGATAATAACGATTGTACT
GAAGATAAGTGTTTAAATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACA
CCATCACCAGTTTCAATTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTT
GAGTGTGATTGTTGTCCAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGT
ATTAAACCAGCAACCACTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACA
ACTGGCAGGGCTACAGGTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGAT
AGATATCATTGTAAAAGAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTA
CCATCAAACTACAAATGTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTC
ACCTGTTTTATGGTTAAAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAA
TCATGTTGTAAATTCACACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTA
AAATTAATATATTATTTCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAA
GTCAACTAATCTCAATTTAATATTACAATATAAACANTAAGTTTA
Length of connected seq. 1175
Full length Seq ID -
Full length Seq. -
Length of full length seq. -