CFK151
Library CF
(Link to library)
Clone ID CFK151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15589-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFK151 (CFK151Q) /CSM/CF/CFK1-C/CFK151Q.Seq.d/
AATTTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTTATT
TTTTTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTAAT
ATTTGTTTTTTTTTTTTTTNAAAAAGGGGXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
IFLIFNFFIYIHKYLFLFLFFFIIFQHNNI*l*fginsvifvffffxkg---


Translated Amino Acid sequence (All Frames)
Frame A:
nfsnf*ffyiyt*ififififfynfpt*qyliiiwy**cnicffffxkr---


Frame B:
IFLIFNFFIYIHKYLFLFLFFFIIFQHNNI*l*fginsvifvffffxkg---


Frame C:
ff*fliflyiyiniyfyfyffl*fsnitisnynlvliv*ylffffxkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN192 (VFN192Q) /CSM/VF/VFN1-D/VFN192Q.Seq.d/ 100 1e-20
VFN105 (VFN105Q) /CSM/VF/VFN1-A/VFN105Q.Seq.d/ 100 1e-20
VFL703 (VFL703Q) /CSM/VF/VFL7-A/VFL703Q.Seq.d/ 100 1e-20
VFJ870 (VFJ870Q) /CSM/VF/VFJ8-C/VFJ870Q.Seq.d/ 100 1e-20
VFJ151 (VFJ151Q) /CSM/VF/VFJ1-C/VFJ151Q.Seq.d/ 100 1e-20
VFA731 (VFA731Q) /CSM/VF/VFA7-B/VFA731Q.Seq.d/ 100 1e-20
SSC647 (SSC647Q) /CSM/SS/SSC6-B/SSC647Q.Seq.d/ 100 1e-20
SFI646 (SFI646Q) /CSM/SF/SFI6-B/SFI646Q.Seq.d/ 100 1e-20
SFG838 (SFG838Q) /CSM/SF/SFG8-B/SFG838Q.Seq.d/ 100 1e-20
CFK151 (CFK151Q) /CSM/CF/CFK1-C/CFK151Q.Seq.d/ 100 1e-20

own update 2001.11.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L16578|L16578.1 Dictyostelium discoideum HIV1 TAT-binding protein homologous protein mRNA, complete cds. 100 1e-17 1
CE688122|CE688122.1 tigr-gss-dog-17000368525821 Dog Library Canis familiaris genomic, genomic survey sequence. 40 0.68 2
AF286886|AF286886.3 Homo sapiens chromosome 8 clone CTA-396G5 map 8q21-q23, complete sequence. 42 2.0 1
AC021237|AC021237.5 Homo sapiens chromosome 8, clone RP11-122A21, complete sequence. 42 2.0 1
AP004388|AP004388.2 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1239C7. 42 2.0 1
AC102198|AC102198.3 Mus musculus clone RP24-499H13, WORKING DRAFT SEQUENCE, 6 unordered pieces. 42 2.0 1
AC091844|AC091844.1 Homo sapiens chromosome 5 clone CTD-2188O14, WORKING DRAFT SEQUENCE, 14 unordered pieces. 36 3.5 3
AC019795|AC019795.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 36 4.2 2
BS000075|BS000075.1 Pan troglodytes chromosome 22 clone:RP43-111A01, map 22, complete sequences. 38 8.0 2
AC124747|AC124747.2 Mus musculus chromosome UNK clone RP23-243O9, WORKING DRAFT SEQUENCE, 16 unordered pieces. 40 8.0 1
dna update 2003.12. 6
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 75,203,435
protein update 2009. 5.16
PSORT

psg: 0.95 gvh: 0.60 alm: 0.27 top: 0.40 tms: 0.07 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for CFK151 is end

5' end seq. ID CFK151F
5' end seq.
>CFK151F.Seq
AATTTTTCTAATTTTTAATTTTTTTATATATATACATAAATATTTATTTTTATTTTTATT
TTTTTTTATAATTTTCCAACATAACAATATCTAATTATAATTTGGTATTAATAGTGTAAT
ATTTGTTTTTTTTTTTTTTNAAAAAGGGGNNNNNNNNNN
Length of 5' end seq. 159
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -