AFF194
Library AF
(Link to library)
Clone ID AFF194
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16110-1
Original site URL
Representative seq. ID AFF194P
(Link to Original site)
Representative DNA sequence
>AFF194 (AFF194Q) /CSM/AF/AFF1-D/AFF194Q.Seq.d/
ACAACAACAACAAATAGAGGAGACAACATCACAACCAACATCAAATGATGATGAATATGA
AAGACAGGTTCAAATTGCATTACAAAAACAACAAGAAAAACAAAGACAGATGGAATTAGA
GATTCAAAGAGAATACGAAAGATTAGCAGCAGAAGGTCAAGGTGTTGAAGAAAATATCGA
TTATGAAGCTGAAGAAAAGAAAAGACAAGAAGAATCTAGAAAGAGAATGCTGGAAAGACA
AAATAAAGCAAAAGGTGCAGCAAAACAAAAAACACCTGAAGATGAAGAAAAAGAAAGAAT
TAAATTAGAAAAACAAAAAGAAAGAGATCAACAAAGAGAATTAATGAGACAAGCAATGAG
TGGTGTAAGTAATGGTGAATCACCTGTAAAGAAAGATAAACAATCATCATCATCATCATC
ACAAAAACCATCAGAAGAAGAAAGTAAATCTGATCAACCAACAACAAAATCTAAATCCCC
ATCACCTCAACCAACAGAAAATAATAATAATAATAATAATAATAATAGTAATGAAGATGA
TGAATATGAAAGAAAAGCAGCAATTGCATTAAAACAACAACAAGAAAAACAAAGACAAAT
GGAATTAGAACTTCAAAGAGAATATGAAAGATTGGCAGCAGAGGAGGGTAAATCACCAGA
ACCAACACCTGAAGAAATTGNGGCAGACCAAAGGAAAAAAGAAGAAGAANTGAAAGGAAG
ATTCCAGGAAGACAAAACATTCNCNCAAAACCAAAAACACCTGAGATGAAGAAAAGGAAG
GAATTXXXXXXXXXXANCNTCAATNNCAACCACAACTTCAATCACAACCACAATCACAAC
AACATCAACCAATTTCATCACAAGATGGATTTAATTTACAATCTCAACAATATTATCAAC
AAATGCAACAACAACAACAACAATTTTATCAACAATTTAATCAATATAATCATCCATCAA
GTCCAAATCATCATAACCAACAACAACAACCAATGTATCATCAACAAAATCAATCACCAT
CACATAATAATAATAATAGTAATAATAGTAGTAATATATCATCACCACCACCACCAACAC
ATCAAAATATGTATCCATACCCACATCAATTTTATTATCCACCACCACATCAAAACATGT
TTACTCAAGAAGATAT
sequence update 2001. 6. 2
Translated Amino Acid sequence
ttttnrgdnittnik***i*ktgsncitkttrktktdgirdskrirkissrrsrc*rkyr
l*s*rkektrri*kenagktk*skrcsktknt*r*rkrkn*irktkrkrstkrinetsne
wck*w*itcker*tiiiiiitktirrrk*i*stnnki*ipitstnrk***********r*
*i*kkssnciktttrktktngirtskri*kigsrgg*itrtnt*RNXGRPKEKRRRXERK
IPGRQNIXXKPKTPEMKKRKE---

---XXNXNHNFNHNHNHNNINQFHHKMDLIYNLNNIINKCNNNNNNFINNLINIIIHQVQ
IIITNNNNQCIINKINHHHIIIIIVIIVVIYHHHHHQHIKICIHTHINFIIHHHIKTCLL
KKI


Translated Amino Acid sequence (All Frames)
Frame A:
ttttnrgdnittnik***i*ktgsncitkttrktktdgirdskrirkissrrsrc*rkyr
l*s*rkektrri*kenagktk*skrcsktknt*r*rkrkn*irktkrkrstkrinetsne
wck*w*itcker*tiiiiiitktirrrk*i*stnnki*ipitstnrk***********r*
*i*kkssnciktttrktktngirtskri*kigsrgg*itrtnt*RNXGRPKEKRRRXERK
IPGRQNIXXKPKTPEMKKRKE---

---XXNXNHNFNHNHNHNNINQFHHKMDLIYNLNNIINKCNNNNNNFINNLINIIIHQVQ
IIITNNNNQCIINKINHHHIIIIIVIIVVIYHHHHHQHIKICIHTHINFIIHHHIKTCLL
KKI

Frame B:
qqqqieettsqptsnddeyerqvqialqkqqekqrqmeleiqreyerlaaegqgveenid
yeaeekkrqeesrkrmlerqnkakgaakqktpedeekeriklekqkerdqqrelmrqams
gvsngespvkkdkqssssssqkpseeesksdqpttkskspspqptennnnnnnnnsnedd
eyerkaaialkqqqekqrqmelelqreyerlaaeegkspeptpeeixadqrkkeeexkgr
fqedktfxqnqkhlr*rkgrn---

---xsxxtttsitttitttstnfitrwi*ftistilstnatttttilsti*si*ssiksk
ss*pttttnvsstksitit**********yiittttntskyvsiptsillstttskhvys
rry

Frame C:
nnnk*rrqhhnqhqmmmnmkdrfklhyknnkknkdrwn*rfkentkd*qqkvkvlkkisi
mklkkrkdkknlerecwkdkikqkvqqnkkhlkmkkkkeln*knkkkeinken**dkq*v
v*vmvnhl*rkinnhhhhhhknhqkkkvnlinqqqnlnphhlnqqkiiiiiiiiivmkmm
nmkekqqlh*nnnkknkdkwn*nfkenmkdwqqrrvnhqnqhlkklxqtkgkkkkx*ked
srktkhsxktknt*deekegi---

---xqxqpqlqsqpqsqqhqpissqdgfnlqsqqyyqqmqqqqqqfyqqfnqynhpsspn
hhnqqqqpmyhqqnqspshnnnnsnnssnissppppthqnmypyphqfyyppphqnmftq
ed

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFF194 (AFF194Q) /CSM/AF/AFF1-D/AFF194Q.Seq.d/ 488 e-136
VHD275 (VHD275Q) /CSM/VH/VHD2-D/VHD275Q.Seq.d/ 281 1e-74
VSA326 (VSA326Q) /CSM/VS/VSA3-B/VSA326Q.Seq.d/ 208 1e-52
SSB655 (SSB655Q) /CSM/SS/SSB6-C/SSB655Q.Seq.d/ 194 2e-48
VHJ276 (VHJ276Q) /CSM/VH/VHJ2-D/VHJ276Q.Seq.d/ 188 1e-46
VSC647 (VSC647Q) /CSM/VS/VSC6-B/VSC647Q.Seq.d/ 129 1e-28
VHK386 (VHK386Q) /CSM/VH/VHK3-D/VHK386Q.Seq.d/ 46 0.001
VHJ619 (VHJ619Q) /CSM/VH/VHJ6-A/VHJ619Q.Seq.d/ 46 0.001
SSG519 (SSG519Q) /CSM/SS/SSG5-A/SSG519Q.Seq.d/ 44 0.005
VHP250 (VHP250Q) /CSM/VH/VHP2-C/VHP250Q.Seq.d/ 42 0.019

own update 2003.12. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 2e-06 12
AC139848|AC139848.2 Mus musculus chromosome UNK clone RP23-358O17, WORKING DRAFT SEQUENCE, 9 unordered pieces. 42 3e-06 10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 4e-06 17
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence. 40 6e-06 8
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 2e-05 17
AC007864|AC007864.4 Trypanosoma brucei chromosome II clone RPCI93-28H13, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces. 46 4e-05 9
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 4e-05 13
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 42 8e-05 10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 9e-05 22
AE017169|AE017169.1 Trypanosoma brucei chromosome 2, section 3 of 4 of the complete sequence. 46 9e-05 10
dna update 2004. 5. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte... 52 4e-05
AE014188_63(AE014188|pid:none) Plasmodium falciparum 3D7 chromos... 48 5e-04
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik... 47 0.001
AF389451_52(AF389451|pid:none) Tiger frog virus, complete genome. 46 0.002
EU146124_1(EU146124|pid:none) Cryptosporidium hominis isolate 88... 46 0.002
AK302306_1(AK302306|pid:none) Homo sapiens cDNA FLJ59579 complet... 46 0.002
CP000478_1294(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 46 0.002
DQ886252_1(DQ886252|pid:none) Cryptosporidium hominis isolate 17... 46 0.002
AJ409115_1(AJ409115|pid:none) Paramecium tetraurelia macronuclea... 46 0.003
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 46 0.003
protein update 2009. 4.19
PSORT

psg: 0.36 gvh: 0.11 alm: 0.25 top: 0.70 tms: 0.07 mit: 0.39 mip: 0.02
nuc: 0.19 erl: 0.00 erm: 1.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.10 leu: 0.10 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: nuclear
24.0 %: mitochondrial
24.0 %: cytoplasmic
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for AFF194 is nuc

5' end seq. ID AFF194F
5' end seq.
>AFF194F.Seq
ACAACAACAACAAATAGAGGAGACAACATCACAACCAACATCAAATGATGATGAATATGA
AAGACAGGTTCAAATTGCATTACAAAAACAACAAGAAAAACAAAGACAGATGGAATTAGA
GATTCAAAGAGAATACGAAAGATTAGCAGCAGAAGGTCAAGGTGTTGAAGAAAATATCGA
TTATGAAGCTGAAGAAAAGAAAAGACAAGAAGAATCTAGAAAGAGAATGCTGGAAAGACA
AAATAAAGCAAAAGGTGCAGCAAAACAAAAAACACCTGAAGATGAAGAAAAAGAAAGAAT
TAAATTAGAAAAACAAAAAGAAAGAGATCAACAAAGAGAATTAATGAGACAAGCAATGAG
TGGTGTAAGTAATGGTGAATCACCTGTAAAGAAAGATAAACAATCATCATCATCATCATC
ACAAAAACCATCAGAAGAAGAAAGTAAATCTGATCAACCAACAACAAAATCTAAATCCCC
ATCACCTCAACCAACAGAAAATAATAATAATAATAATAATAATAATAGTAATGAAGATGA
TGAATATGAAAGAAAAGCAGCAATTGCATTAAAACAACAACAAGAAAAACAAAGACAAAT
GGAATTAGAACTTCAAAGAGAATATGAAAGATTGGCAGCAGAGGAGGGTAAATCACCAGA
ACCAACACCTGAAGAAATTGNGGCAGACCAAAGGAAAAAAGAAGAAGAANTGAAAGGAAG
ATTCCAGGAAGACAAAACATTCNCNCAAAACCAAAAACACCTGAGATGAAGAAAAGGAAG
GAATT----------
Length of 5' end seq. 785
3' end seq. ID AFF194Z
3' end seq.
>AFF194Z.Seq
----------ANCNTCAATNNCAACCACAACTTCAATCACAACCACAATCACAACAACAT
CAACCAATTTCATCACAAGATGGATTTAATTTACAATCTCAACAATATTATCAACAAATG
CAACAACAACAACAACAATTTTATCAACAATTTAATCAATATAATCATCCATCAAGTCCA
AATCATCATAACCAACAACAACAACCAATGTATCATCAACAAAATCAATCACCATCACAT
AATAATAATAATAGTAATAATAGTAGTAATATATCATCACCACCACCACCAACACATCAA
AATATGTATCCATACCCACATCAATTTTATTATCCACCACCACATCAAAACATGTTTACT
CAAGAAGATAT
Length of 3' end seq. 361
Connected seq. ID AFF194P
Connected seq.
>AFF194P.Seq
ACAACAACAACAAATAGAGGAGACAACATCACAACCAACATCAAATGATGATGAATATGA
AAGACAGGTTCAAATTGCATTACAAAAACAACAAGAAAAACAAAGACAGATGGAATTAGA
GATTCAAAGAGAATACGAAAGATTAGCAGCAGAAGGTCAAGGTGTTGAAGAAAATATCGA
TTATGAAGCTGAAGAAAAGAAAAGACAAGAAGAATCTAGAAAGAGAATGCTGGAAAGACA
AAATAAAGCAAAAGGTGCAGCAAAACAAAAAACACCTGAAGATGAAGAAAAAGAAAGAAT
TAAATTAGAAAAACAAAAAGAAAGAGATCAACAAAGAGAATTAATGAGACAAGCAATGAG
TGGTGTAAGTAATGGTGAATCACCTGTAAAGAAAGATAAACAATCATCATCATCATCATC
ACAAAAACCATCAGAAGAAGAAAGTAAATCTGATCAACCAACAACAAAATCTAAATCCCC
ATCACCTCAACCAACAGAAAATAATAATAATAATAATAATAATAATAGTAATGAAGATGA
TGAATATGAAAGAAAAGCAGCAATTGCATTAAAACAACAACAAGAAAAACAAAGACAAAT
GGAATTAGAACTTCAAAGAGAATATGAAAGATTGGCAGCAGAGGAGGGTAAATCACCAGA
ACCAACACCTGAAGAAATTGNGGCAGACCAAAGGAAAAAAGAAGAAGAANTGAAAGGAAG
ATTCCAGGAAGACAAAACATTCNCNCAAAACCAAAAACACCTGAGATGAAGAAAAGGAAG
GAATT----------ANCNTCAATNNCAACCACAACTTCAATCACAACCACAATCACAAC
AACATCAACCAATTTCATCACAAGATGGATTTAATTTACAATCTCAACAATATTATCAAC
AAATGCAACAACAACAACAACAATTTTATCAACAATTTAATCAATATAATCATCCATCAA
GTCCAAATCATCATAACCAACAACAACAACCAATGTATCATCAACAAAATCAATCACCAT
CACATAATAATAATAATAGTAATAATAGTAGTAATATATCATCACCACCACCACCAACAC
ATCAAAATATGTATCCATACCCACATCAATTTTATTATCCACCACCACATCAAAACATGT
TTACTCAAGAAGATAT
Length of connected seq. 1146
Full length Seq ID -
Full length Seq. -
Length of full length seq. -