>CFK123 (CFK123Q) /CSM/CF/CFK1-A/CFK123Q.Seq.d/
XXXXXXXXXXTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAN
AAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAAT
TTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACA
AGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATT
TCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTA
GTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAG
TTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCAT
GTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAA
TGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACC

---HVDAASGGFVAPFLQPXIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHK
DLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQV
KKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNL

Frame A:
---HVDAASGGFVAPFLQPXIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHK
DLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQV
KKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNL


Frame B:
---msmqqvvvslhpffnxklfgildyhvlnqlmalvinlvylhwelagsygevkmtftr
iwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv*imvfsfpskl
kntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpilyqty


Frame C:
---crcskwwfrctlsstxnclgf*tttc*in*wlws*iwsisigswlgrmer*k*hsqg
fgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrsssslsrswyfhfqas*
ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancilystklt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/                       1023   0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/                       1023   0.0
SFK692 (SFK692Q) /CSM/SF/SFK6-D/SFK692Q.Seq.d/                       1023   0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/                       1023   0.0
SFJ796 (SFJ796Q) /CSM/SF/SFJ7-D/SFJ796Q.Seq.d/                       1023   0.0
SFJ789 (SFJ789Q) /CSM/SF/SFJ7-D/SFJ789Q.Seq.d/                       1023   0.0
SFJ443 (SFJ443Q) /CSM/SF/SFJ4-B/SFJ443Q.Seq.d/                       1023   0.0
SFI324 (SFI324Q) /CSM/SF/SFI3-A/SFI324Q.Seq.d/                       1023   0.0
SFI272 (SFI272Q) /CSM/SF/SFI2-C/SFI272Q.Seq.d/                       1023   0.0
SFH461 (SFH461Q) /CSM/SF/SFH4-C/SFH461Q.Seq.d/                       1023   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    50   3e-05  2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    56   6e-05  2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    56   6e-05  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    56   6e-05  2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    56   7e-05  2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence.    56   8e-05  2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence.    56   8e-05  2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    48   1e-04  2
CF514038|CF514038.1 CAbud0007_IVF_G07 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0007_IVF_G07 5', mRNA sequence.    56   5e-04  1
CB910900|CB910900.1 VVD157G07_379711 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVD157G07 5, mRNA sequence.    56   5e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   265   7e-70
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   263   2e-69
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   258   8e-68
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   256   2e-67
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   255   5e-67
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   244   9e-64
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   238   7e-62
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   238   9e-62
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   237   1e-61
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t...   234   9e-61

 psg: 0.75  gvh: 0.39  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFK123 is nuc

>CFK123Z.Seq
NNNNNNNNNNTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAN
AAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAAT
TTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACA
AGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATT
TCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTA
GTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAG
TTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCAT
GTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAA
TGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACC