AFF192 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFF192
Library	AF (Link to library)
Clone ID	AFF192 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12230-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFF1-D/AFF192Q.Seq.d/
Representative seq. ID	AFF192P (Link to Original site)
Representative DNA sequence	>AFF192 (AFF192Q) /CSM/AF/AFF1-D/AFF192Q.Seq.d/ AAAATATCAATATTAAAATTTAAAATACTATTCAACAAACGATAAATATATATATTTGTT TTCATTATTTATTTATTTATTAATTTAAATAGTATAAACAAAATGGGAAAGGATTATACA TTTATTAGAAATTGGATTAGTTTCCATTTTATGGGAAATATTAATAATTTTTCATATTGC GTTGTAAATGCAGCAAGTGGTAACTTATCAGCTTATTTTCACAACTCTAAAAATATTGGA ATTATTCTTTGGGCAAATATTGCATTTGGTTTAGTTTCAAGATTGGTTAATACATTTTTA ATTGAAAATGTTAATTCGAAATTAAAGATAGTAGTAAATTGTTTATTTATGTCAATTGGT TTAATTGGTGTAGCATTATCAGTATATGTTAATTTTGGATTTTGTATAGCAGCCATAGCA TTTGTTGGTATTGCAAGTTCATTTGGTGAGAGTGTAATTCTCTCATACATGAAGAAATTT CCTGCAGAGCTAGTTAATGGTTGGTCAAGTGGTACAGGTATTGCAGGTGTATGTGGTTCA TTGTXXXXXXXXXXCAATAGCAGCAATAACAGCAAATATACAGAGAAACAATCATTGGTT AAAAAGGACCAACTTATTGAAGATATAGATGATGGTGGTGGTGCTGAAGTTGCACCACCA GGTGAAACTAAAAAACAAAGATATATTCGTTGTGCACGTTTAGTTTGGTTCAATGCTGTC AATTTAGCATTGGTTTATTTCTTTGAATATGTTGCAAGTGTAGGTGGTGCTGATCTTGCC TTGAAAAAGGATCCAAACAATGATAATTTCTTCATTGCAAATGCATTTGCAATCTTTAGT TTTTGTTATCAATTGGGTGTATTAATCTCACGTTCTTCACTTCAATTCGTTAAAATCAAA CATATTGGTGTTATCACCATCCTTCAAGGTATTAATATGGTCTTTTGGATCATACAAGCA AAATATAAAATGGTCACCTCTGTTTGGGTACTCTTTATTCTCATGGTTTATTGTGGTCTT TTAGGTGGTGCTTCTTATGTTAATGTATTTTACTTAATTCTTCATCAAAAAAATATTCCA AATGAAGATAGAGAACTTTGCATTAATTATGCTGCTTTATTAGTTACTGTTGGTATTACA CTCGCAGCTTGTTTCATTCTCGTTATGGACCATACATTTTTAGCCTCTGAGGTTCCAAAA ACNATTCTTCATCCTCAACATAAATAAAATTTTTTATG
sequence update	2001. 6. 2
Translated Amino Acid sequence	kisilkfkilfnkrIYIFVFIIYLFINLNSINKMGKDYTFIRNWISFHFMGNINNFSYC VVNAASGNLSAYFHNSKNIGIILWANIAFGLVSRLVNTFLIENVNSKLKIVVNCLFMSIG LIGVALSVYVNFGFCIAAIAFVGIASSFGESVILSYMKKFPAELVNGWSSGTGIAGVCGS L--- ---NSSNNSKYTEKQSLVKKDQLIEDIDDGGGAEVAPPGETKKQRYIRCARLVWFNAVNL ALVYFFEYVASVGGADLALKKDPNNDNFFIANAFAIFSFCYQLGVLISRSSLQFVKIKHI GVITILQGINMVFWIIQAKYKMVTSVWVLFILMVYCGLLGGASYVNVFYLILHQKNIPNE DRELCINYAALLVTVGITLAACFILVMDHTFLASEVPKTILHPQHKnfl
Translated Amino Acid sequence (All Frames)	Frame A: kisilkfkilfnkrIYIFVFIIYLFINLNSINKMGKDYTFIRNWISFHFMGNINNFSYC VVNAASGNLSAYFHNSKNIGIILWANIAFGLVSRLVNTFLIENVNSKLKIVVNCLFMSIG LIGVALSVYVNFGFCIAAIAFVGIASSFGESVILSYMKKFPAELVNGWSSGTGIAGVCGS L--- ---qqqqqiyretiigkgptyryrwwwcscttrnktkiyslctfslvqccqf siglflicckcrwcsclekgskqflhckcicnlfllsigcinltfftsirnqty wcyhhpsryyglldhtskinghlclgtlyshgllwsfrwcflccillnssskkysk* rrtlhlccfisycwyytrslfhsrygpyifslgsknxsssstikffm Frame B: kyqynlkyystndkyiylfslfiylliivtkweriihlleiglvsilweiliifhia lmqqvvtyqlifttlkilelffgqilhlvfqdwlihflkmlirnr*ivylcqlv lvhyqymlildfvqphllvlqvhlvrvfshtrnflqslmvgqvvqvlqvyvvh c--- ---NSSNNSKYTEKQSLVKKDQLIEDIDDGGGAEVAPPGETKKQRYIRCARLVWFNAVNL ALVYFFEYVASVGGADLALKKDPNNDNFFIANAFAIFSFCYQLGVLISRSSLQFVKIKHI GVITILQGINMVFWIIQAKYKMVTSVWVLFILMVYCGLLGGASYVNVFYLILHQKNIPNE DRELCINYAALLVTVGITLAACFILVMDHTFLASEVPKTILHPQHKnfl Frame C: ninikintiqqtiniyicfhylfiyfkykqngkglyiykldfpfygky*ffilr ckcskwlislfsqlkywnyslgkyciwfsfkigyifnkcfeikdssklfiyvnwf nwcsiisicfwilysshsicwyckfiwecnsliheeiscraswlvkwyrycrcmwfi --- ---iaaitaniqrnnhwlkrtnllkimmvvvlklhhqvklknkdifvvhvfgsmlsi hwfislnmlqvvvlilpkriqtmiisslqmhlqslvfvinwvyshvlhfnslksnil vlspsfkvliwsfgsykqnikwsplfgyslfswfivvfvvllmlmyftffikkifqmk ienfalimllylllvlhsqlvsfslwtihf*plrfqkxffilninkify
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFF192 (AFF192Q) /CSM/AF/AFF1-D/AFF192Q.Seq.d/ 2157 0.0 SFI873 (SFI873Q) /CSM/SF/SFI8-D/SFI873Q.Seq.d/ 1308 0.0 SFC282 (SFC282Q) /CSM/SF/SFC2-D/SFC282Q.Seq.d/ 1306 0.0 SLB574 (SLB574Q) /CSM/SL/SLB5-D/SLB574Q.Seq.d/ 1294 0.0 SFF259 (SFF259Q) /CSM/SF/SFF2-C/SFF259Q.Seq.d/ 1289 0.0 VFL723 (VFL723Q) /CSM/VF/VFL7-A/VFL723Q.Seq.d/ 1285 0.0 CHC249 (CHC249Q) /CSM/CH/CHC2-C/CHC249Q.Seq.d/ 1283 0.0 AFM629 (AFM629Q) /CSM/AF/AFM6-B/AFM629Q.Seq.d/ 1283 0.0 VSG493 (VSG493Q) /CSM/VS/VSG4-D/VSG493Q.Seq.d/ 1231 0.0 SSG810 (SSG810Q) /CSM/SS/SSG8-A/SSG810Q.Seq.d/ 1207 0.0
own update	2009. 4. 3
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 2e-07 22 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 5e-06 21 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 5e-05 17 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 34 8e-05 17 AP004170\|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 38 8e-05 15 AX344560\|AX344560.1 Sequence 11 from Patent WO0200932. 50 1e-04 15 AB063522\|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 36 2e-04 17 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 7e-04 13 AB063521\|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2. 36 0.001 20 AX344564\|AX344564.1 Sequence 15 from Patent WO0200932. 34 0.002 16
dna update	2004. 5. 4
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q6BZW3) RecName: Full=Protein BTN1; Flags: Precursor; &CR38213... 112 3e-23 AY693139_1(AY693139\|pid:none) Saccharomyces cerevisiae clone FLH... 112 3e-23 AF058447_1(AF058447\|pid:none) Saccharomyces cerevisiae strain K2... 112 3e-23 (Q29611) RecName: Full=Battenin; AltName: Full=Protein CLN3; &A... 111 6e-23 AK313002_1(AK313002\|pid:none) Homo sapiens cDNA, FLJ93467, highl... 110 7e-23 (Q61124) RecName: Full=Battenin; AltName: Full=Protein CLN3; &U... 109 2e-22 (Q6CLN9) RecName: Full=Protein BTN1; Flags: Precursor; &CR38212... 107 8e-22 (Q60HH0) RecName: Full=Battenin; AltName: Full=Protein CLN3; &A... 107 1e-21 AM502224_134(AM502224\|pid:none) Leishmania infantum chromosome 6. 105 2e-21 AE014296_3140(AE014296\|pid:none) Drosophila melanogaster chromos... 104 5e-21
protein update	2009. 4.19
PSORT	psg: 0.98 gvh: 0.54 alm: 0.18 top: 0.60 tms: 0.53 mit: 0.22 mip: 0.14 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 1.00 m_ : 0.00 60.0 %: plasma membrane 16.0 %: endoplasmic reticulum 8.0 %: vacuolar 4.0 %: Golgi 4.0 %: mitochondrial 4.0 %: cytoplasmic 4.0 %: nuclear >> prediction for AFF192 is pla
5' end seq. ID	AFF192F
5' end seq.	>AFF192F.Seq AAAATATCAATATTAAAATTTAAAATACTATTCAACAAACGATAAATATATATATTTGTT TTCATTATTTATTTATTTATTAATTTAAATAGTATAAACAAAATGGGAAAGGATTATACA TTTATTAGAAATTGGATTAGTTTCCATTTTATGGGAAATATTAATAATTTTTCATATTGC GTTGTAAATGCAGCAAGTGGTAACTTATCAGCTTATTTTCACAACTCTAAAAATATTGGA ATTATTCTTTGGGCAAATATTGCATTTGGTTTAGTTTCAAGATTGGTTAATACATTTTTA ATTGAAAATGTTAATTCGAAATTAAAGATAGTAGTAAATTGTTTATTTATGTCAATTGGT TTAATTGGTGTAGCATTATCAGTATATGTTAATTTTGGATTTTGTATAGCAGCCATAGCA TTTGTTGGTATTGCAAGTTCATTTGGTGAGAGTGTAATTCTCTCATACATGAAGAAATTT CCTGCAGAGCTAGTTAATGGTTGGTCAAGTGGTACAGGTATTGCAGGTGTATGTGGTTCA TTGT----------
Length of 5' end seq.	544
3' end seq. ID	AFF192Z
3' end seq.	>AFF192Z.Seq ----------CAATAGCAGCAATAACAGCAAATATACAGAGAAACAATCATTGGTTAAAA AGGACCAACTTATTGAAGATATAGATGATGGTGGTGGTGCTGAAGTTGCACCACCAGGTG AAACTAAAAAACAAAGATATATTCGTTGTGCACGTTTAGTTTGGTTCAATGCTGTCAATT TAGCATTGGTTTATTTCTTTGAATATGTTGCAAGTGTAGGTGGTGCTGATCTTGCCTTGA AAAAGGATCCAAACAATGATAATTTCTTCATTGCAAATGCATTTGCAATCTTTAGTTTTT GTTATCAATTGGGTGTATTAATCTCACGTTCTTCACTTCAATTCGTTAAAATCAAACATA TTGGTGTTATCACCATCCTTCAAGGTATTAATATGGTCTTTTGGATCATACAAGCAAAAT ATAAAATGGTCACCTCTGTTTGGGTACTCTTTATTCTCATGGTTTATTGTGGTCTTTTAG GTGGTGCTTCTTATGTTAATGTATTTTACTTAATTCTTCATCAAAAAAATATTCCAAATG AAGATAGAGAACTTTGCATTAATTATGCTGCTTTATTAGTTACTGTTGGTATTACACTCG CAGCTTGTTTCATTCTCGTTATGGACCATACATTTTTAGCCTCTGAGGTTCCAAAAACNA TTCTTCATCCTCAACATAAATAAAATTTTTTATG
Length of 3' end seq.	684
Connected seq. ID	AFF192P
Connected seq.	>AFF192P.Seq AAAATATCAATATTAAAATTTAAAATACTATTCAACAAACGATAAATATATATATTTGTT TTCATTATTTATTTATTTATTAATTTAAATAGTATAAACAAAATGGGAAAGGATTATACA TTTATTAGAAATTGGATTAGTTTCCATTTTATGGGAAATATTAATAATTTTTCATATTGC GTTGTAAATGCAGCAAGTGGTAACTTATCAGCTTATTTTCACAACTCTAAAAATATTGGA ATTATTCTTTGGGCAAATATTGCATTTGGTTTAGTTTCAAGATTGGTTAATACATTTTTA ATTGAAAATGTTAATTCGAAATTAAAGATAGTAGTAAATTGTTTATTTATGTCAATTGGT TTAATTGGTGTAGCATTATCAGTATATGTTAATTTTGGATTTTGTATAGCAGCCATAGCA TTTGTTGGTATTGCAAGTTCATTTGGTGAGAGTGTAATTCTCTCATACATGAAGAAATTT CCTGCAGAGCTAGTTAATGGTTGGTCAAGTGGTACAGGTATTGCAGGTGTATGTGGTTCA TTGT----------CAATAGCAGCAATAACAGCAAATATACAGAGAAACAATCATTGGTT AAAAAGGACCAACTTATTGAAGATATAGATGATGGTGGTGGTGCTGAAGTTGCACCACCA GGTGAAACTAAAAAACAAAGATATATTCGTTGTGCACGTTTAGTTTGGTTCAATGCTGTC AATTTAGCATTGGTTTATTTCTTTGAATATGTTGCAAGTGTAGGTGGTGCTGATCTTGCC TTGAAAAAGGATCCAAACAATGATAATTTCTTCATTGCAAATGCATTTGCAATCTTTAGT TTTTGTTATCAATTGGGTGTATTAATCTCACGTTCTTCACTTCAATTCGTTAAAATCAAA CATATTGGTGTTATCACCATCCTTCAAGGTATTAATATGGTCTTTTGGATCATACAAGCA AAATATAAAATGGTCACCTCTGTTTGGGTACTCTTTATTCTCATGGTTTATTGTGGTCTT TTAGGTGGTGCTTCTTATGTTAATGTATTTTACTTAATTCTTCATCAAAAAAATATTCCA AATGAAGATAGAGAACTTTGCATTAATTATGCTGCTTTATTAGTTACTGTTGGTATTACA CTCGCAGCTTGTTTCATTCTCGTTATGGACCATACATTTTTAGCCTCTGAGGTTCCAAAA ACNATTCTTCATCCTCAACATAAATAAAATTTTTTATG
Length of connected seq.	1228
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas