CFJ854
Library CF
(Link to library)
Clone ID CFJ854
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFJ854 (CFJ854Q) /CSM/CF/CFJ8-C/CFJ854Q.Seq.d/
XXXXXXXXXXTCACACAAAGACTATCCATTAATTCNAATTGGTCGTATGGTTTTGAATCG
TAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGT
TCCAGGTATTGANCCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGA
TACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGC
CGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGG
TGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATT
TGCTCAACATNAATTTGACGTCTCTGGTTTCNNTGCTCGNCANCCATACAATCATCCAAA
TGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCG
TTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCG
NGCCGTTTCNCACTTTCCAAGGCGACAAAGATTTAGGTGCTCGTCTATGTAAG
sequence update 2001.11.22
Translated Amino Acid sequence
---HKDYPLIXIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIXPSPDKMLQGRLFSYPDT
HRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFA
QHXFDVSGFXARXPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVRA
VSHFPRRQRFRCSSM*


Translated Amino Acid sequence (All Frames)
Frame A:
---htktih*fxlvvwf*iviqritllklnklpshhptwfqvlxhhqircykvvssliqi
liviv*v*tinksqsivhsp*rvvlkttnvmvswlsmvmvvkvqtinqtlsvvqshiqnl
lnxnltslvsxlxxhtiiqmttlfnqviyidsclkmpnlvssli*svtcpvspskkfkfx
pfxtfqgdkdlgarlck


Frame B:
---tqrlsinsnwsygfes*srellc*s*tsclltiphgsry*xitr*dvtrsslllsry
ssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*ww*rsklstklfrwsratsric
stxi*rlwfxcsxxiqssk*rlcstr*fi*thv*rcqisfrl*fsrshvrchhqrnsssx
rfxlskatki*vlvyv


Frame C:
---HKDYPLIXIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIXPSPDKMLQGRLFSYPDT
HRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFA
QHXFDVSGFXARXPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVRA
VSHFPRRQRFRCSSM*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ854 (CFJ854Q) /CSM/CF/CFJ8-C/CFJ854Q.Seq.d/ 1102 0.0
VFA635 (VFA635Q) /CSM/VF/VFA6-B/VFA635Q.Seq.d/ 1065 0.0
VFJ551 (VFJ551Q) /CSM/VF/VFJ5-C/VFJ551Q.Seq.d/ 1059 0.0
AFD822 (AFD822Q) /CSM/AF/AFD8-A/AFD822Q.Seq.d/ 1059 0.0
SFF245 (SFF245Q) /CSM/SF/SFF2-B/SFF245Q.Seq.d/ 1053 0.0
VFM644 (VFM644Q) /CSM/VF/VFM6-B/VFM644Q.Seq.d/ 1051 0.0
VFM191 (VFM191Q) /CSM/VF/VFM1-D/VFM191Q.Seq.d/ 1051 0.0
VFK159 (VFK159Q) /CSM/VF/VFK1-C/VFK159Q.Seq.d/ 1051 0.0
VFI657 (VFI657Q) /CSM/VF/VFI6-C/VFI657Q.Seq.d/ 1051 0.0
VFB123 (VFB123Q) /CSM/VF/VFB1-A/VFB123Q.Seq.d/ 1051 0.0

own update 2005. 1. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1021 0.0 2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1021 0.0 2
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 7e-17 2
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 7e-17 2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 76 4e-15 2
U40704|U40704.1 Candida albicans catalase (Cat) gene, complete cds. 72 9e-09 1
AV405682|AV405682.1 Bombyx mori cDNA clone:wdV30109. 52 1e-08 2
BX564920|BX564920.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse74e09_q1c. 68 1e-07 1
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse15b01_q1c. 68 1e-07 1
BX554266|BX554266.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse14d06_q1c. 68 1e-07 1
dna update 2003.12. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 372 e-103
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 216 4e-55
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 216 4e-55
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 216 5e-55
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 214 1e-54
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 213 3e-54
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 210 3e-53
(Q9PWF7) RecName: Full=Catalase; EC=1.11.1.6; &AB03187... 206 5e-52
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili... 204 1e-51
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 204 2e-51
protein update 2009. 5.16
PSORT

psg: 0.53 gvh: 0.47 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.09
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: vacuolar

>> prediction for CFJ854 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ854Z
3' end seq.
>CFJ854Z.Seq
NNNNNNNNNNTCACACAAAGACTATCCATTAATTCNAATTGGTCGTATGGTTTTGAATCG
TAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGT
TCCAGGTATTGANCCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGA
TACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGC
CGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGG
TGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATT
TGCTCAACATNAATTTGACGTCTCTGGTTTCNNTGCTCGNCANCCATACAATCATCCAAA
TGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCG
TTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCG
NGCCGTTTCNCACTTTCCAAGGCGACAAAGATTTAGGTGCTCGTCTATGTAAG
Length of 3' end seq. 593
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -