>CFJ845 (CFJ845Q) /CSM/CF/CFJ8-B/CFJ845Q.Seq.d/
ATTTATTATTTATTTGTTGTGCTAGTATTATTTTTATTATAGATAATAGAATACAGCCTT
CATATATTATAATATAGCGAAAAAATGAATCATTCAAGTAAAAAAAATAAAAATCGTATT
CTTAGAAATAAAGCTAGAATATATTGTGATGTAAATCTTCACAAACCAAAGGAATATTGG
AACTATGAAGCTTTAAATGTTAAATGGGAAACTCAAGATGATTATGAAATTATTAGAAAA
ATAGGTAGAGGTAAATATTCAGAAGTATTTGAAGGTGCCAACATTAAAAACAATGAAAAA
TGTGTAATTAAAGTATTGAAACCAGTTAAAAAGAAGAAGATTAAGAGAGAGATTAAGATT
CTTCAAAATCTTTGTGGTGGACCAAATATCATTACATTATATGATGTCGTTAGAGATCCA
CAATCAAAGACTCCAAGCTTAATTTTTGAGTATATCAACAATACCGATTTCAAACATCTC
TCACCAACACTCACCGATTTCGATGTAAGATATTACATTAGAGAATTATTACACGCATTG
GATTTTTGTCATTCAAACGGTATCATGCATAGAGATGTTAAACCATCAAACGTTATGATT
GATCATCAAAAAAXXXXXXXXXXAATAATAACAACTGATATTGATTTCCCANCAAGAAAT
TNAAATCAAAAATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAA
TCAAAATCAAAATCAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACAAAAA
CAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAC
AAAAACAAAATTAAAATCCAAACT

iyylfvvlvlfll*iieyslhil*YSEKMNHSSKKNKNRILRNKARIYCDVNLHKPKEYW
NYEALNVKWETQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREIKI
LQNLCGGPNIITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLHAL
DFCHSNGIMHRDVKPSNVMIDHQK---

---IITTDIDFPXRNXNQKSKSKSIPIPIPKSKSKSKSKSKSKSKLKLKQKQKQKQKQKQ
KQKQKQKQKQKQKQNKNKIKIQT

Frame A:
iyylfvvlvlfll*iieyslhil*YSEKMNHSSKKNKNRILRNKARIYCDVNLHKPKEYW
NYEALNVKWETQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREIKI
LQNLCGGPNIITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLHAL
DFCHSNGIMHRDVKPSNVMIDHQK---

---nnnn*y*fpxkkxkskikikintntntkikikikikikikiktktktktktktktkt
ktktktktktktktkqkqn*npn

Frame B:
fiiyllc*yyfyyr**ntafiyyniakk*iiqvkkikivfleikleyivm*iftnqrnig
tmkl*mlngklkmimkllek*vevniqkylkvptlktmknv*lky*nqlkrrrlrerlrf
fkifvvdqislhymmsleihnqrlqa*flsistipisnishqhspism*ditlenyythw
ifviqtvsciemlnhqtl*liikk---

---IITTDIDFPXRNXNQKSKSKSIPIPIPKSKSKSKSKSKSKSKLKLKQKQKQKQKQKQ
KQKQKQKQKQKQKQNKNKIKIQT

Frame C:
llficcasiifiidnriqpsyiii*rknesfk*kk*ksys*k*s*nil*ckssqtkgile
l*sfkc*mgnsr*l*ny*knr*r*ifrsi*rcqh*kq*kmcn*siets*keed*erd*ds
skslwwtkyhyii*cr*rstikdsklnf*vyqqyrfqtsltnthrfrckilh*riitrig
flsfkryha*rc*tikryd*ssk---

---**qlilisxqeixiknqnqnqyqyqyqnqnqnqnqnqnqnqn*n*nknknknknknk
nknknknknknknktktklksk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ845 (CFJ845Q) /CSM/CF/CFJ8-B/CFJ845Q.Seq.d/                       1005   0.0
VFA127 (VFA127Q) /CSM/VF/VFA1-B/VFA127Q.Seq.d/                        983   0.0
SHL221 (SHL221Q) /CSM/SH/SHL2-A/SHL221Q.Seq.d/                        983   0.0
SHI863 (SHI863Q) /CSM/SH/SHI8-C/SHI863Q.Seq.d/                        983   0.0
SHC634 (SHC634Q) /CSM/SH/SHC6-B/SHC634Q.Seq.d/                        983   0.0
SFF312 (SFF312Q) /CSM/SF/SFF3-A/SFF312Q.Seq.d/                        983   0.0
SFF289 (SFF289Q) /CSM/SF/SFF2-D/SFF289Q.Seq.d/                        983   0.0
SFC281 (SFC281Q) /CSM/SF/SFC2-D/SFC281Q.Seq.d/                        983   0.0
SFB548 (SFB548Q) /CSM/SF/SFB5-B/SFB548Q.Seq.d/                        983   0.0
CFF548 (CFF548Q) /CSM/CF/CFF5-B/CFF548Q.Seq.d/                        983   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L05535|L05535.1 Dictyostelium discoideum casein kinase II alpha subunit mRNA, complete cds.   983   0.0    2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   793   0.0    11
BG125104|BG125104.1 EST470750 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF7L21 5' sequence, mRNA sequence.    66   6e-15  2
BG129212|BG129212.1 EST474858 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF23L13 5' sequence, mRNA sequence.    66   6e-15  2
BI924012|BI924012.1 EST543901 tomato flower, buds 0-3 mm Lycopersicon esculentum cDNA clone cTOA22C11 5' end, mRNA sequence.    66   6e-15  2
AW623754|AW623754.1 EST321699 tomato flower buds 3-8 mm, Cornell University Lycopersicon esculentum cDNA clone cTOB13E3 5', mRNA sequence.    66   6e-15  2
AW648090|AW648090.1 EST326544 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI3K16 5', mRNA sequence.    66   6e-15  2
BE451505|BE451505.1 EST402393 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY19A14, mRNA sequence.    66   6e-15  2
BE433080|BE433080.1 EST399609 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG12K23, mRNA sequence.    66   6e-15  2
AF374474|AF374474.1 Nicotiana tabacum CK2 alpha subunit (CK2A) mRNA, complete cds.    62   8e-14  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q02720) RecName: Full=Casein kinase II subunit alpha;          ...   322   1e-86
AC117076_51(AC117076|pid:none) Dictyostelium discoideum chromoso...   317   4e-85
(P28523) RecName: Full=Casein kinase II subunit alpha;          ...   230   4e-59
AB036786_1(AB036786|pid:none) Oryza sativa Indica Group Kasalath...   230   4e-59
AP005244_27(AP005244|pid:none) Oryza sativa Japonica Group genom...   230   5e-59
BT035859_1(BT035859|pid:none) Zea mays full-length cDNA clone ZM...   229   9e-59
AF370308_1(AF370308|pid:none) Arabidopsis thaliana putative case...   229   1e-58
EU284834_1(EU284834|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   228   2e-58
D10247_1(D10247|pid:none) Arabidopsis thaliana ATPK15D mRNA for ...   228   2e-58
EU966838_1(EU966838|pid:none) Zea mays clone 297679 unknown mRNA.     227   3e-58

 psg: 0.32  gvh: 0.09  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.05
 nuc: 0.22  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CFJ845 is nuc

>CFJ845F.Seq
ATTTATTATTTATTTGTTGTGCTAGTATTATTTTTATTATAGATAATAGAATACAGCCTT
CATATATTATAATATAGCGAAAAAATGAATCATTCAAGTAAAAAAAATAAAAATCGTATT
CTTAGAAATAAAGCTAGAATATATTGTGATGTAAATCTTCACAAACCAAAGGAATATTGG
AACTATGAAGCTTTAAATGTTAAATGGGAAACTCAAGATGATTATGAAATTATTAGAAAA
ATAGGTAGAGGTAAATATTCAGAAGTATTTGAAGGTGCCAACATTAAAAACAATGAAAAA
TGTGTAATTAAAGTATTGAAACCAGTTAAAAAGAAGAAGATTAAGAGAGAGATTAAGATT
CTTCAAAATCTTTGTGGTGGACCAAATATCATTACATTATATGATGTCGTTAGAGATCCA
CAATCAAAGACTCCAAGCTTAATTTTTGAGTATATCAACAATACCGATTTCAAACATCTC
TCACCAACACTCACCGATTTCGATGTAAGATATTACATTAGAGAATTATTACACGCATTG
GATTTTTGTCATTCAAACGGTATCATGCATAGAGATGTTAAACCATCAAACGTTATGATT
GATCATCAAAAAANNNNNNNNNN

>CFJ845Z.Seq
NNNNNNNNNNAATAATAACAACTGATATTGATTTCCCANCAAGAAATTNAAATCAAAAAT
CAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAAAAT
CAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACAAAAACAAAAACAAAAAC
AAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAACAAAAACAAAATTA
AAATCCAAACT

>CFJ845P.Seq
ATTTATTATTTATTTGTTGTGCTAGTATTATTTTTATTATAGATAATAGAATACAGCCTT
CATATATTATAATATAGCGAAAAAATGAATCATTCAAGTAAAAAAAATAAAAATCGTATT
CTTAGAAATAAAGCTAGAATATATTGTGATGTAAATCTTCACAAACCAAAGGAATATTGG
AACTATGAAGCTTTAAATGTTAAATGGGAAACTCAAGATGATTATGAAATTATTAGAAAA
ATAGGTAGAGGTAAATATTCAGAAGTATTTGAAGGTGCCAACATTAAAAACAATGAAAAA
TGTGTAATTAAAGTATTGAAACCAGTTAAAAAGAAGAAGATTAAGAGAGAGATTAAGATT
CTTCAAAATCTTTGTGGTGGACCAAATATCATTACATTATATGATGTCGTTAGAGATCCA
CAATCAAAGACTCCAAGCTTAATTTTTGAGTATATCAACAATACCGATTTCAAACATCTC
TCACCAACACTCACCGATTTCGATGTAAGATATTACATTAGAGAATTATTACACGCATTG
GATTTTTGTCATTCAAACGGTATCATGCATAGAGATGTTAAACCATCAAACGTTATGATT
GATCATCAAAAAA----------AATAATAACAACTGATATTGATTTCCCANCAAGAAAT
TNAAATCAAAAATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAA
TCAAAATCAAAATCAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACAAAAA
CAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAC
AAAAACAAAATTAAAATCCAAACT