CFJ795
Library CF
(Link to library)
Clone ID CFJ795
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFJ795P
(Link to Original site)
Representative DNA sequence
>CFJ795 (CFJ795Q) /CSM/CF/CFJ7-D/CFJ795Q.Seq.d/
TAGATAAATTAAAAAATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATT
AAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATC
AAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAA
GAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCA
GCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAA
CCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAA
GTACAAGAATTCATTGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGT
CAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGT
TTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCA
ATCTCAATGATTTGCGGTAACGTCXXXXXXXXXXTACATAATGAAATTCAAAAATNTTNA
CGATGCTTTTGCCTGGAATAATGAAGTNCCACAAGGTCTCTCATNTTCCCTNTTCNCAAA
CAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGGTCTGACTGTGGTATAGTTAA
CGTAAATGNAGCTACAAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGAC
CGGAGGTGGTANANAATCTGGCTCAGACANCTGGAAACAGTATTGCCGTCGTAGNACTAA
NACNATCAACCTATGGTAATACTATGCCNTTATCNCAAGGNATCNATTTTAACTAAAATT
ACCNAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATAT
sequence update 2001.11.22
Translated Amino Acid sequence
*in*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIATVRGAAPE
EYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKIYIEAKGE
VQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCAVLGWNAA
ISMICGNV---

---YIMKFKNXXDAFAWNNEVPQGLSXSLFXNNQXNIFKWLGPTGSDCGIVNVNXATNGA
EIGGAXGGEKKTGGGXXSGSDXWKQYCRRXTXTINLW*yyaxixrxxf*lklpkkktkcn
lhninkri


Translated Amino Acid sequence (All Frames)
Frame A:
*in*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIATVRGAAPE
EYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKIYIEAKGE
VQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCAVLGWNAA
ISMICGNV---

---YIMKFKNXXDAFAWNNEVPQGLSXSLFXNNQXNIFKWLGPTGSDCGIVNVNXATNGA
EIGGAXGGEKKTGGGXXSGSDXWKQYCRRXTXTINLW*yyaxixrxxf*lklpkkktkcn
lhninkri

Frame B:
r*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllqllevlhqk
nmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvkftlklkvk
yknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishvpylvgmlq
sq*favt---

---t**nskxxtmllpgimkxhkvshxpxsqtikxissngldxpgltvv*lt*mxlqtvl
klvxplevkkrpevvxnlaqtxgnsiavvxlxxstygntmplsqgixfn*nyxkkkpnvt
yit*ikey

Frame C:
dklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycnc*rcctrr
i*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*nlh*s*r*s
trih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmcrtwleccn
lndlr*r---

---hneiqkxxrcfcle**sxtrslxfpxxkqskxylqmawtxrv*lwys*rkxsykrc*
nwwxxwr*kkdrrwxxiwlrxletvlps*x*xxqpmvilcxyxkxsiltkitxkknqm*l
t*hk*kn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ795 (CFJ795Q) /CSM/CF/CFJ7-D/CFJ795Q.Seq.d/ 1592 0.0
VFN466 (VFN466Q) /CSM/VF/VFN4-C/VFN466Q.Seq.d/ 1116 0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/ 1116 0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1116 0.0
VFJ183 (VFJ183Q) /CSM/VF/VFJ1-D/VFJ183Q.Seq.d/ 1116 0.0
VFD815 (VFD815Q) /CSM/VF/VFD8-A/VFD815Q.Seq.d/ 1116 0.0
VFC606 (VFC606Q) /CSM/VF/VFC6-A/VFC606Q.Seq.d/ 1116 0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/ 1116 0.0
VFA742 (VFA742Q) /CSM/VF/VFA7-B/VFA742Q.Seq.d/ 1116 0.0
SFL408 (SFL408Q) /CSM/SF/SFL4-A/SFL408Q.Seq.d/ 1116 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 785 0.0 9
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 6e-12 2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 2e-11 2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 4e-06 2
BJ550374|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence. 44 5e-06 4
BF200236|BF200236.1 WHE2254_E08_J16ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE2254_E08_J16, mRNA sequence. 52 9e-06 3
BQ806838|BQ806838.1 WHE3583_G06_M11ZS Wheat developing grains cDNA library Triticum aestivum cDNA clone WHE3583_G06_M11, mRNA sequence. 44 3e-05 4
BG444603|BG444603.1 GA__Ea0024O05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0024O05f, mRNA sequence. 42 2e-04 2
AJ481102|AJ481102.1 Hordeum vulgare EST clone S0001100147B08F1. 44 4e-04 3
AJ481101|AJ481101.1 Hordeum vulgare EST clone S0001100114A09F1. 44 6e-04 3
dna update 2003.12. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 375 e-102
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 233 7e-60
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 231 3e-59
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 229 1e-58
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 224 2e-57
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 223 7e-57
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 222 2e-56
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 221 2e-56
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 221 2e-56
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 221 4e-56
protein update 2009. 5.16
PSORT

psg: 0.78 gvh: 0.31 alm: 0.29 top: 0.57 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CFJ795 is nuc

5' end seq. ID CFJ795F
5' end seq.
>CFJ795F.Seq
TAGATAAATTAAAAAATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATT
AAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATC
AAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAA
GAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCA
GCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAA
CCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAA
GTACAAGAATTCATTGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGT
CAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGT
TTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCA
ATCTCAATGATTTGCGGTAACGTCNNNNNNNNNN
Length of 5' end seq. 574
3' end seq. ID CFJ795Z
3' end seq.
>CFJ795Z.Seq
NNNNNNNNNNTACATAATGAAATTCAAAAATNTTNACGATGCTTTTGCCTGGAATAATGA
AGTNCCACAAGGTCTCTCATNTTCCCTNTTCNCAAACAATCAAAANAATATCTTCAAATG
GCTTGGACCNACCGGGTCTGACTGTGGTATAGTTAACGTAAATGNAGCTACAAACGGTGC
TGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGACCGGAGGTGGTANANAATCTGGCTC
AGACANCTGGAAACAGTATTGCCGTCGTAGNACTAANACNATCAACCTATGGTAATACTA
TGCCNTTATCNCAAGGNATCNATTTTAACTAAAATTACCNAAAAAAAAAACCAAATGTAA
CTTACATAACATAAATAAAAGAATAT
Length of 3' end seq. 386
Connected seq. ID CFJ795P
Connected seq.
>CFJ795P.Seq
TAGATAAATTAAAAAATGACTACCTTTAACGAATATCCATTCTTGGCTGAATTAGGCATT
AAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATGGGGAGGTGCTGGTGAAATCATC
AAATGTTTAAATCCAACAAATAATAAAGTTATTGCAACTGTTAGAGGTGCTGCACCAGAA
GAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAAAGTAAAATGGGCATTAACACCA
GCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCAAGCCATGAGAGAAAAAATTGAA
CCATTATCAAAATTAATTTCATTAGAAATGGGTAAAATTTACATTGAAGCTAAAGGTGAA
GTACAAGAATTCATTGACGTATGCGATTATGCAACTGGTTTAAGTAGATCAATCAATGGT
CAAGTGATGCCATCTGAACGTCCAAATCACATTTTAATGGAAACCTGGAATCCATTAGGT
TTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGCCGTACTTGGTTGGAATGCTGCA
ATCTCAATGATTTGCGGTAACGTC----------TACATAATGAAATTCAAAAATNTTNA
CGATGCTTTTGCCTGGAATAATGAAGTNCCACAAGGTCTCTCATNTTCCCTNTTCNCAAA
CAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGGTCTGACTGTGGTATAGTTAA
CGTAAATGNAGCTACAAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGAC
CGGAGGTGGTANANAATCTGGCTCAGACANCTGGAAACAGTATTGCCGTCGTAGNACTAA
NACNATCAACCTATGGTAATACTATGCCNTTATCNCAAGGNATCNATTTTAACTAAAATT
ACCNAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAATAT
Length of connected seq. 940
Full length Seq ID -
Full length Seq. -
Length of full length seq. -