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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ762
Library CF
(Link to library)
Clone ID CFJ762
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07997-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFJ762 (CFJ762Q) /CSM/CF/CFJ7-C/CFJ762Q.Seq.d/
XXXXXXXXXXTGAAAGGTTATTCACTAANAGCATTAATTGCTCAAAATGTTAAAAGTGAC
CCNTTTGAATATAATNNANCAGTTTTAGGTNNNTCNNATGAAGGATATTGTAATTGGATT
CNGNNTCCAAANAATTGGGGTGGAGCNNTTGAATTATCNNTTTTATCTNNTCATTATAAG
GTGGNGNCTGCAGCTTTTGATATATCAACTCNACTNATGTATTGTTATGGTNAANATAGA
AAATATACTGTTNGTGTTTATNTCATTTATGATGGTNTCCATTATGATGCACTTTCAATT
T
sequence update 2001.11.22
Translated Amino Acid sequence 
---KGYSLXALIAQNVKSDPFEYNXXVLGXSXEGYCNWIXXPXNWGGAXELSXLSXHYKV
XXAAFDISTXLMYCYGXXRKYTVXVYXIYDGXHYDALSI
Translated Amino Acid sequence (All Frames) 
Frame A:
---erlftxsincskc*k*px*i*xxsfrxxx*ril*ldsxskxlgwsx*iixfixsl*g
gxcsf*yinstxvllwxx*kiycxclxhl*wxpl*ctfn


Frame B:
---KGYSLXALIAQNVKSDPFEYNXXVLGXSXEGYCNWIXXPXNWGGAXELSXLSXHYKV
XXAAFDISTXLMYCYGXXRKYTVXVYXIYDGXHYDALSI


Frame C:
---kvih*xh*llkmlkvtxlnixxqf*vxxmkdivigfxxqxigvexlnyxfylxiirw
xlqlliyqlxxcivmvxienilxvfxsfmmvsimmhfqf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ762 (CFJ762Q) /CSM/CF/CFJ7-C/CFJ762Q.Seq.d/                        404   e-112
SSL595 (SSL595Q) /CSM/SS/SSL5-D/SSL595Q.Seq.d/                        178   3e-44
AFD356 (AFD356Q) /CSM/AF/AFD3-C/AFD356Q.Seq.d/                         32   4.5
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CA912899|CA912899.1 PCS05885F Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Unknown protein (NM_103949), mRNA sequence.    44   1.0    1
CA912898|CA912898.1 PCS02586 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Unknown protein (NM_103949), mRNA sequence.    44   1.0    1
BU827410|BU827410.1 K001P77P Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    34   2.6    2
BU875533|BU875533.1 V008C08 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    34   2.9    2
CG117347|CG117347.1 PUKBB58TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0778J20, genomic survey sequence.    42   4.1    1
BZ994435|BZ994435.1 PUGIV07TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa394A14, DNA sequence.    42   4.1    1
BZ975348|BZ975348.1 PUFJB91TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa354P14, DNA sequence.    42   4.1    1
AW399888|AW399888.1 707052E10.x1 707 - Mixed adult tissues from Walbot lab (SK) Zea mays cDNA, mRNA sequence.    42   4.1    1
CG117345|CG117345.1 PUKBB58TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0778J20, genomic survey sequence.    42   4.1    1
AW400272|AW400272.1 707057B11.x1 707 - Mixed adult tissues from Walbot lab (SK) Zea mays cDNA, mRNA sequence.    42   4.1    1
dna update 2003.12. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BI3) RecName: Full=Ubiquitin thioesterase OTU1;          EC=...   157   1e-37
BT052173_1(BT052173|pid:none) Medicago truncatula clone MTYF9_FA...    88   8e-17
BT053029_1(BT053029|pid:none) Medicago truncatula clone MTYFL_FM...    88   8e-17
EF084872_1(EF084872|pid:none) Picea sitchensis clone WS0295_C13 ...    87   2e-16
(Q567B1) RecName: Full=Ubiquitin thioesterase OTU1;          EC=...    77   1e-13
(Q8CB27) RecName: Full=Ubiquitin thioesterase OTU1;          EC=...    77   1e-13
AK053730_1(AK053730|pid:none) Mus musculus 0 day neonate eyeball...    77   1e-13
AY069295_1(AY069295|pid:none) Drosophila melanogaster GM14814 fu...    77   1e-13
(Q29FC9) RecName: Full=Ubiquitin thioesterase OTU1;          EC=...    76   3e-13
(Q5VVQ6) RecName: Full=Ubiquitin thioesterase OTU1;          EC=...    75   7e-13
protein update 2009. 5.16
PSORT 

 psg: 0.88  gvh: 0.47  alm: 0.48  top: 0.33  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for CFJ762 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ762Z
3' end seq. 
>CFJ762Z.Seq
NNNNNNNNNNTGAAAGGTTATTCACTAANAGCATTAATTGCTCAAAATGTTAAAAGTGAC
CCNTTTGAATATAATNNANCAGTTTTAGGTNNNTCNNATGAAGGATATTGTAATTGGATT
CNGNNTCCAAANAATTGGGGTGGAGCNNTTGAATTATCNNTTTTATCTNNTCATTATAAG
GTGGNGNCTGCAGCTTTTGATATATCAACTCNACTNATGTATTGTTATGGTNAANATAGA
AAATATACTGTTNGTGTTTATNTCATTTATGATGGTNTCCATTATGATGCACTTTCAATT
T
Length of 3' end seq. 301
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -