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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ662
Library CF
(Link to library)
Clone ID CFJ662
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11649-1
Original site URL
Representative seq. ID CFJ662P
(Link to Original site)
Representative DNA sequence 
>CFJ662 (CFJ662Q) /CSM/CF/CFJ6-C/CFJ662Q.Seq.d/
TAAAGAAAGCATATAGAAAGATGGCTGTTAAATACCATCCAGATAAAAATCAAGGACCAG
GTAAAGATGCAGCCGAAGCAAAATTTAAAGATATTAGTGAAGCATATGAAGTTTTAAGTG
ATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTGAAGGTATGAAGGAGAGTGGTT
TCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCTTTGGTGCAGGAGGTGGCGGTG
GTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTGGTGGATTTAGTTTTGGTAATA
TGGGAGGTATGGGCGGCATGGGTGACATGGGTGGCGGTCACAAGNAGAGAAGAXXXXXXX
XXXAAAGAAGAGGATAAATGTAAAGAATGCAAAGGTAAAAGAGTTATACAAGGTAAGAAG
ATCGTACAATTCCAAGTCGAGAAAGGTACTAGAGATGGCGAAAGAATCATGTTACAAGGT
CAAGGTTCCGAGTATCCAGGTGTACCACCAGGTGATGTAATCATTACAATTCGTGAGAAA
CCAAATGTAAATTTCAAGAGAAATGGTGATAATTTAATCTACACCAAACGTTTAAAATTA
TTAGACTCAATCGCTGGTAGTCAATTCATTATAAACACATTGGATCAACGTAAACTTTGG
GTCAATCATGAGAAAGGTGATATAATTAAGCAAGGTGATATGCGTTACATAGAGAATGAA
GGTATGCCAATTAAAGGTACCTCTAGAAAAGGTAAATTAATCATTGCTTTTGATATTGAA
TATCCATCGAATCTTACAAATGATGATATTGAAAAACTCTCTAAAATCTTACCAAAAGCT
GCCACCCCTTCTGTTTCAAAATCTGATTGTAAATCGGTTGGTCTCTCAAAGGTAAACTTT
AATACCAACGAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACATGGTGGT
GCTTATGGTCATCAAAAACAACAACAACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAA
TTTGGTGGGGGGTCCACAACAAGCACAACAGTGTCAACAACAA
sequence update 2001.11.22
Translated Amino Acid sequence 
KKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSEGMKESGF
HASSAEDLFSHFFGAGGGGGGFSFGGGGGDDFGGFSFGNMGGMGGMGDMGGGHKXRR---

---KEEDKCKECKGKRVIQGKKIVQFQVEKGTRDGERIMLQGQGSEYPGVPPGDVIITIR
EKPNVNFKRNGDNLIYTKRLKLLDSIAGSQFIINTLDQRKLWVNHEKGDIIKQGDMRYIE
NEGMPIKGTSRKGKLIIAFDIEYPSNLTNDDIEKLSKILPKAATPSVSKSDCKSVGLSKV
NFNTNEQSSHGGAGGAYQQHGGAYGHQKQQQQGFNPADFGAQFGGGSTTSTTVSTT
Translated Amino Acid sequence (All Frames) 
Frame A:
*rkhierwllntiqikikdqvkmqpkqnlkilvkhmkf*viqrrerctivmvlkv*rrvv
smhhqlktsshislvqevavvdlvsevvvvmilvdlvlviwevwaawvtwvavtxre---

---KEEDKCKECKGKRVIQGKKIVQFQVEKGTRDGERIMLQGQGSEYPGVPPGDVIITIR
EKPNVNFKRNGDNLIYTKRLKLLDSIAGSQFIINTLDQRKLWVNHEKGDIIKQGDMRYIE
NEGMPIKGTSRKGKLIIAFDIEYPSNLTNDDIEKLSKILPKAATPSVSKSDCKSVGLSKV
NFNTNEQSSHGGAGGAYQQHGGAYGHQKQQQQGFNPADFGAQFGGGSTTSTTVSTT

Frame B:
kesi*kdgc*ipsr*ksrtr*rcsrski*ry**si*sfk*sreekdvr*lwf*ryegewf
pciis*rplltflwcrrwrwwi*frrwww**fwwi*fw*ygrygrhg*hgwrsqxek---

---kkrinvknakvkelykvrrsynsksrkvlemakescykvkvpsiqvyhqvm*slqfv
rnqm*isremvii*stpnv*ny*tqslvvnsl*thwinvnfgsimrkvi*lskvicvt*r
mkvcqlkvplekvn*slllilnihrilqmmilknslksyqklppllfqnlivnrlvsqr*
tliptnkvlmvvlvvlinnmvvlmviknnnnkvlillilvlnlvggpqqaqqcqqq

Frame C:
KKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEKRKMYDSYGSEGMKESGF
HASSAEDLFSHFFGAGGGGGGFSFGGGGGDDFGGFSFGNMGGMGGMGDMGGGHKXRR---

---rrg*m*rmqr*ksytr*edrtipsrery*rwrknhvtrsrfrvsrcttr*cnhyns*
etkckfqekw**fnlhqtfkiirlnrw*sihykhigst*tlgqs*er*yn*ar*yalhre
*ryan*ryl*kr*inhcf*y*isiesyk**y*ktl*nltkschpfcfki*l*igwslkgk
l*yqrtkfswwcwwclsttwwclwsskttttrf*sc*fwcsiwwgvhnkhnsvnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ662 (CFJ662Q) /CSM/CF/CFJ6-C/CFJ662Q.Seq.d/                       2042   0.0
CHC270 (CHC270Q) /CSM/CH/CHC2-C/CHC270Q.Seq.d/                       1368   0.0
SFE772 (SFE772Q) /CSM/SF/SFE7-C/SFE772Q.Seq.d/                       1366   0.0
CFG324 (CFG324Q) /CSM/CF/CFG3-A/CFG324Q.Seq.d/                       1324   0.0
SLH333 (SLH333Q) /CSM/SL/SLH3-B/SLH333Q.Seq.d/                       1314   0.0
AFL309 (AFL309Q) /CSM/AF/AFL3-A/AFL309Q.Seq.d/                       1298   0.0
SLA810 (SLA810Q) /CSM/SL/SLA8-A/SLA810Q.Seq.d/                       1279   0.0
AFK111 (AFK111Q) /CSM/AF/AFK1-A/AFK111Q.Seq.d/                       1277   0.0
SFB251 (SFB251Q) /CSM/SF/SFB2-C/SFB251Q.Seq.d/                       1245   0.0
SLE413 (SLE413Q) /CSM/SL/SLE4-A/SLE413Q.Seq.d/                       1217   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***.    40   1e-06  9
BP505917|BP505917.1 Hydra magnipapillata cDNA, clone:hm_03959.     60   2e-05  2
CF600357|CF600357.1 tac28g11.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to TR:O60884 O60884 DNAJ PROTEIN. ;, mRNA sequence.    60   2e-05  2
CA301645|CA301645.1 taa06b03.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to TR:O60884 O60884 DNAJ PROTEIN. ;, mRNA sequence.    60   2e-05  2
BF595059|BF595059.1 su63e08.y1 Gm-c1069 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1069-1744 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   4e-05  2
BE805892|BE805892.1 ss62f10.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-1028 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   4e-05  2
BM309208|BM309208.1 sak55h09.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-7265 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   4e-05  2
BG881859|BG881859.1 sae90f10.y1 Gm-c1065 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1065-3332 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   4e-05  2
BF424117|BF424117.1 su46e03.y1 Gm-c1069 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1069-197 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   4e-05  2
CA939032|CA939032.1 sav41b06.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-5460 5' similar to TR:O24074 O24074 DNAJ-LIKE PROTEIN. ;, mRNA sequence.    58   4e-05  2
dna update 2003.12. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ED3) RecName: Full=DnaJ homolog subfamily A member 1 homolog;     354   3e-96
AB264719_1(AB264719|pid:none) Papilio xuthus mRNA for similar to...   120   6e-26
EU306561_1(EU306561|pid:none) Tigriopus japonicus heat shock pro...   120   6e-26
AY267904_1(AY267904|pid:none) Sus scrofa pDJA1 chaperone mRNA, c...   118   3e-25
(Q95JF4) RecName: Full=DnaJ homolog subfamily A member 1; AltNam...   117   5e-25
(P63036) RecName: Full=DnaJ homolog subfamily A member 1; AltNam...   117   7e-25
(Q5NVI9) RecName: Full=DnaJ homolog subfamily A member 1;  &CR92...   117   7e-25
AK167139_1(AK167139|pid:none) Mus musculus blastocyst blastocyst...   117   7e-25
AB306276_1(AB306276|pid:none) Alligator mississippiensis HSP40 m...   117   7e-25
AB169031_1(AB169031|pid:none) Macaca fascicularis testis cDNA, c...   117   7e-25
protein update 2009. 5.16
PSORT 

 psg: 0.45  gvh: 0.19  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CFJ662 is nuc
5' end seq. ID CFJ662F
5' end seq. 
>CFJ662F.Seq
TAAAGAAAGCATATAGAAAGATGGCTGTTAAATACCATCCAGATAAAAATCAAGGACCAG
GTAAAGATGCAGCCGAAGCAAAATTTAAAGATATTAGTGAAGCATATGAAGTTTTAAGTG
ATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTGAAGGTATGAAGGAGAGTGGTT
TCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCTTTGGTGCAGGAGGTGGCGGTG
GTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTGGTGGATTTAGTTTTGGTAATA
TGGGAGGTATGGGCGGCATGGGTGACATGGGTGGCGGTCACAAGNAGAGAAGANNNNNNN
NNN
Length of 5' end seq. 363
3' end seq. ID CFJ662Z
3' end seq. 
>CFJ662Z.Seq
NNNNNNNNNNAAAGAAGAGGATAAATGTAAAGAATGCAAAGGTAAAAGAGTTATACAAGG
TAAGAAGATCGTACAATTCCAAGTCGAGAAAGGTACTAGAGATGGCGAAAGAATCATGTT
ACAAGGTCAAGGTTCCGAGTATCCAGGTGTACCACCAGGTGATGTAATCATTACAATTCG
TGAGAAACCAAATGTAAATTTCAAGAGAAATGGTGATAATTTAATCTACACCAAACGTTT
AAAATTATTAGACTCAATCGCTGGTAGTCAATTCATTATAAACACATTGGATCAACGTAA
ACTTTGGGTCAATCATGAGAAAGGTGATATAATTAAGCAAGGTGATATGCGTTACATAGA
GAATGAAGGTATGCCAATTAAAGGTACCTCTAGAAAAGGTAAATTAATCATTGCTTTTGA
TATTGAATATCCATCGAATCTTACAAATGATGATATTGAAAAACTCTCTAAAATCTTACC
AAAAGCTGCCACCCCTTCTGTTTCAAAATCTGATTGTAAATCGGTTGGTCTCTCAAAGGT
AAACTTTAATACCAACGAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACA
TGGTGGTGCTTATGGTCATCAAAAACAACAACAACAAGGTTTTAATCCTGCTGATTTTGG
TGCTCAATTTGGTGGGGGGTCCACAACAAGCACAACAGTGTCAACAACAA
Length of 3' end seq. 710
Connected seq. ID CFJ662P
Connected seq. 
>CFJ662P.Seq
TAAAGAAAGCATATAGAAAGATGGCTGTTAAATACCATCCAGATAAAAATCAAGGACCAG
GTAAAGATGCAGCCGAAGCAAAATTTAAAGATATTAGTGAAGCATATGAAGTTTTAAGTG
ATCCAGAGAAGAGAAAGATGTACGATAGTTATGGTTCTGAAGGTATGAAGGAGAGTGGTT
TCCATGCATCATCAGCTGAAGACCTCTTCTCACATTTCTTTGGTGCAGGAGGTGGCGGTG
GTGGATTTAGTTTCGGAGGTGGTGGTGGTGATGATTTTGGTGGATTTAGTTTTGGTAATA
TGGGAGGTATGGGCGGCATGGGTGACATGGGTGGCGGTCACAAGNAGAGAAGA-------
---AAAGAAGAGGATAAATGTAAAGAATGCAAAGGTAAAAGAGTTATACAAGGTAAGAAG
ATCGTACAATTCCAAGTCGAGAAAGGTACTAGAGATGGCGAAAGAATCATGTTACAAGGT
CAAGGTTCCGAGTATCCAGGTGTACCACCAGGTGATGTAATCATTACAATTCGTGAGAAA
CCAAATGTAAATTTCAAGAGAAATGGTGATAATTTAATCTACACCAAACGTTTAAAATTA
TTAGACTCAATCGCTGGTAGTCAATTCATTATAAACACATTGGATCAACGTAAACTTTGG
GTCAATCATGAGAAAGGTGATATAATTAAGCAAGGTGATATGCGTTACATAGAGAATGAA
GGTATGCCAATTAAAGGTACCTCTAGAAAAGGTAAATTAATCATTGCTTTTGATATTGAA
TATCCATCGAATCTTACAAATGATGATATTGAAAAACTCTCTAAAATCTTACCAAAAGCT
GCCACCCCTTCTGTTTCAAAATCTGATTGTAAATCGGTTGGTCTCTCAAAGGTAAACTTT
AATACCAACGAACAAAGTTCTCATGGTGGTGCTGGTGGTGCTTATCAACAACATGGTGGT
GCTTATGGTCATCAAAAACAACAACAACAAGGTTTTAATCCTGCTGATTTTGGTGCTCAA
TTTGGTGGGGGGTCCACAACAAGCACAACAGTGTCAACAACAA
Length of connected seq. 1053
Full length Seq ID -
Full length Seq. -
Length of full length seq. -