CFJ593
Library CF
(Link to library)
Clone ID CFJ593
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFJ593 (CFJ593Q) /CSM/CF/CFJ5-D/CFJ593Q.Seq.d/
XXXXXXXXXXGTGCAAATTTAGAACCAGATTGTCCAACATCTGTATGTTTTGATGGTCAA
TGTNCAGTTTGTGAAGTTGATTCAAGCTCTGTTGATCTTTCAACCACTGGTATANTTACA
ACCACTGGCATTTCTATATCTACAATTGGTCCTGTATCAACAACTGATTTATCAATTTCA
ACAATTGGTTTTGTAACTACCANTGGTGTAACAGCTTCAACGATTGNCATTGTTACTACA
ACTGGNTTCATAACTTCAACAACTTCAACAACTGGTTTATTAACCACTGCTTCAACAACC
TCAACAACTGGTATATTAACCACTGCTTCATCAACTTCAACAACGGGAATACCAACAATT
TCAACATCAATTTCGACATCAGGAGCAACAGGAACAACAACAACCCCAACAACAGGTTCC
ACTGGAACAATACCACCTATTGACCTTGCAAAATGTAGTCATGATTCTTGCCCACCTCAT
TATTACTGTTATCAATTAACAAATTCATACACTTGTATATCAAAAGAATTTTATAATAAT
TGTGAACCTGAAAGATTAATATTATTTTATTAATAATTAAAAACAAAA
sequence update 2001.11.22
Translated Amino Acid sequence
---ANLEPDCPTSVCFDGQCXVCEVDSSSVDLSTTGIXTTTGISISTIGPVSTTDLSIST
IGFVTTXGVTASTIXIVTTTGFITSTTSTTGLLTTASTTSTTGILTTASSTSTTGIPTIS
TSISTSGATGTTTTPTTGSTGTIPPIDLAKCSHDSCPPHYYCYQLTNSYTCISKEFYNNC
EPERLILFY**lktk


Translated Amino Acid sequence (All Frames)
Frame A:
---ckfrtrlsnicmf*wsmxsl*s*fklc*sfnhwyxynhwhfyiynwscinn*finfn
nwfcnyxwcnsfndxhcyynwxhnfnnfnnwfinhcfnnlnnwyinhcfinfnngntnnf
ninfdirsnrnnnnpnnrfhwnntty*pckm*s*flptsllllsinkfihlyikril**l
*t*kiniilliiknk


Frame B:
---ANLEPDCPTSVCFDGQCXVCEVDSSSVDLSTTGIXTTTGISISTIGPVSTTDLSIST
IGFVTTXGVTASTIXIVTTTGFITSTTSTTGLLTTASTTSTTGILTTASSTSTTGIPTIS
TSISTSGATGTTTTPTTGSTGTIPPIDLAKCSHDSCPPHYYCYQLTNSYTCISKEFYNNC
EPERLILFY**lktk


Frame C:
---qi*nqivqhlyvlmvnvqfvkliqallifqplvxlqplaflylqlvlyqqliyqfqq
lvl*lpxv*qlqrlxlllqlxs*lqqlqqlvy*pllqqpqqlvy*pllhqlqqreyqqfq
hqfrhqeqqeqqqpqqqvpleqyhlltlqnvvmilahliitvin*qihtlvyqknfiiiv
nlkd*yyfinn*kq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ593 (CFJ593Q) /CSM/CF/CFJ5-D/CFJ593Q.Seq.d/ 648 0.0
SLB129 (SLB129Q) /CSM/SL/SLB1-B/SLB129Q.Seq.d/ 640 0.0
SFL410 (SFL410Q) /CSM/SF/SFL4-A/SFL410Q.Seq.d/ 640 0.0
SFL391 (SFL391Q) /CSM/SF/SFL3-D/SFL391Q.Seq.d/ 640 0.0
SFJ534 (SFJ534Q) /CSM/SF/SFJ5-B/SFJ534Q.Seq.d/ 640 0.0
SFH324 (SFH324Q) /CSM/SF/SFH3-A/SFH324Q.Seq.d/ 640 0.0
SFG761 (SFG761Q) /CSM/SF/SFG7-C/SFG761Q.Seq.d/ 640 0.0
SFF219 (SFF219Q) /CSM/SF/SFF2-A/SFF219Q.Seq.d/ 640 0.0
SFE370 (SFE370Q) /CSM/SF/SFE3-C/SFE370Q.Seq.d/ 640 0.0
SFE249 (SFE249Q) /CSM/SF/SFE2-C/SFE249Q.Seq.d/ 640 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence. 32 1e-05 11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 8e-04 14
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 36 0.002 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 0.003 15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 0.003 13
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence. 36 0.004 5
BI594773|BI594773.1 As_tgz_43G10_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_43G10 5', mRNA sequence. 34 0.007 3
BI783045|BI783045.1 kh45h12.y1 Ascaris suum male gut pAMP1 v2 Chiapelli McCarter Ascaris suum cDNA 5' similar to contains element MER37 repetitive element ;, mRNA sequence. 34 0.008 3
BM278692|BM278692.1 As_tgz_66A08_SKPL Ascaris suum adult male testis germinal zone from Alan Scott Ascaris suum cDNA clone As_tgz_66A08 5', mRNA sequence. 34 0.009 3
AL928870|AL928870.5 Zebrafish DNA sequence from clone CH211-237D5 in linkage group 20. 38 0.010 7
dna update 2003.12. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FJ580047_1(FJ580047|pid:none) Apis mellifera neurexin I isoform ... 34 3.3
FJ580046_1(FJ580046|pid:none) Apis mellifera neurexin I isoform ... 34 3.3
AK084876_1(AK084876|pid:none) Mus musculus 13 days embryo lung c... 33 4.3
AK041633_1(AK041633|pid:none) Mus musculus 3 days neonate thymus... 33 4.3
(P10493) RecName: Full=Nidogen-1; Short=NID-1; AltName:... 33 4.3
X14480_1(X14480|pid:none) Mouse mRNA for nidogen. 33 4.3

protein update 2009. 5.16
PSORT

psg: 0.75 gvh: 0.41 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for CFJ593 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ593Z
3' end seq.
>CFJ593Z.Seq
NNNNNNNNNNGTGCAAATTTAGAACCAGATTGTCCAACATCTGTATGTTTTGATGGTCAA
TGTNCAGTTTGTGAAGTTGATTCAAGCTCTGTTGATCTTTCAACCACTGGTATANTTACA
ACCACTGGCATTTCTATATCTACAATTGGTCCTGTATCAACAACTGATTTATCAATTTCA
ACAATTGGTTTTGTAACTACCANTGGTGTAACAGCTTCAACGATTGNCATTGTTACTACA
ACTGGNTTCATAACTTCAACAACTTCAACAACTGGTTTATTAACCACTGCTTCAACAACC
TCAACAACTGGTATATTAACCACTGCTTCATCAACTTCAACAACGGGAATACCAACAATT
TCAACATCAATTTCGACATCAGGAGCAACAGGAACAACAACAACCCCAACAACAGGTTCC
ACTGGAACAATACCACCTATTGACCTTGCAAAATGTAGTCATGATTCTTGCCCACCTCAT
TATTACTGTTATCAATTAACAAATTCATACACTTGTATATCAAAAGAATTTTATAATAAT
TGTGAACCTGAAAGATTAATATTATTTTATTAATAATTAAAAACAAAA
Length of 3' end seq. 588
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -