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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ554
Library CF
(Link to library)
Clone ID CFJ554
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08294-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CFJ554 (CFJ554Q) /CSM/CF/CFJ5-C/CFJ554Q.Seq.d/
XXXXXXXXXXTCTCTTTCCTCACTGTTCCGAAAACANGCTANNCANCNCCCAGAGAGAAN
TNACAACACNCCCCANTAGAAATNAACCAAGATNTGGACACTTNAGCGCACTTNCNCANC
NTANTCGNNNANGNNGNCNNAGGCCATCTTGTACAAAT
sequence update 2001.11.22
Translated Amino Acid sequence 
---LFPHCSENXLXXXQREXTTXPXRNXPRXGHXSALXXXXRXXXXRPSCTN
Translated Amino Acid sequence (All Frames) 
Frame A:
---LFPHCSENXLXXXQREXTTXPXRNXPRXGHXSALXXXXRXXXXRPSCTN


Frame B:
---sfltvpktxxxxprexxqhxpxexnqdxdtxahxxxxxxxxxxghlvq


Frame C:
---lsslfrkxaxxxperxxntpx*kxtkxwtlxrtxxxxsxxxxxailyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ554 (CFJ554Q) /CSM/CF/CFJ5-C/CFJ554Q.Seq.d/                        139   1e-32
VSJ394 (VSJ394Q) /CSM/VS/VSJ3-D/VSJ394Q.Seq.d/                         64   6e-10
VSH363 (VSH363Q) /CSM/VS/VSH3-C/VSH363Q.Seq.d/                         64   6e-10
VSH226 (VSH226Q) /CSM/VS/VSH2-B/VSH226Q.Seq.d/                         64   6e-10
VSF755 (VSF755Q) /CSM/VS/VSF7-C/VSF755Q.Seq.d/                         64   6e-10
VSE214 (VSE214Q) /CSM/VS/VSE2-A/VSE214Q.Seq.d/                         64   6e-10
VSD101 (VSD101Q) /CSM/VS/VSD1-A/VSD101Q.Seq.d/                         64   6e-10
VSB809 (VSB809Q) /CSM/VS/VSB8-A/VSB809Q.Seq.d/                         64   6e-10
VHK157 (VHK157Q) /CSM/VH/VHK1-C/VHK157Q.Seq.d/                         64   6e-10
VFO871 (VFO871Q) /CSM/VF/VFO8-C/VFO871Q.Seq.d/                         64   6e-10
own update 2005. 1. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    64   5e-07  1
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    64   5e-07  1
dna update 2003.12. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...    35   1.0
protein update 2008.12.29
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFJ554 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ554Z
3' end seq. 
>CFJ554Z.Seq
NNNNNNNNNNTCTCTTTCCTCACTGTTCCGAAAACANGCTANNCANCNCCCAGAGAGAAN
TNACAACACNCCCCANTAGAAATNAACCAAGATNTGGACACTTNAGCGCACTTNCNCANC
NTANTCGNNNANGNNGNCNNAGGCCATCTTGTACAAAT
Length of 3' end seq. 158
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -