AFF144
Library AF
(Link to library)
Clone ID AFF144
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFF144P
(Link to Original site)
Representative DNA sequence
>AFF144 (AFF144Q) /CSM/AF/AFF1-B/AFF144Q.Seq.d/
ATTATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATA
TTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTT
CATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATA
GTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATG
CAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTT
ATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACC
ATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTT
ACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCA
ACTCATGGGATTAACCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAAAAT
GGTTTGGGATGGGATATCCTTGCATCTTTTTAXXXXXXXXXXCTTTCAGGTTTCTAATGA
TCAATTAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCGCTGGTGC
AGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGC
TGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTAC
TCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGG
CGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGG
CAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGA
GATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGC
ACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGA
TGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAA
AGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGA
AAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGC
ACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCACGTAAAAGAGGTGCAAG
AAATTAAAAAAAGAAAAAATAAAAATA
sequence update 2001. 6. 2
Translated Amino Acid sequence
iiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqviciplliifghvi
vsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdet
mlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGINLGFDPQYDTAYPDEN
GLGWDILASF---

---FQVSNDQLIAIDVGIAGGAIVAGAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRV
GNSIRSRATRYANQGYNSMRNGAQRAGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGY
QAWREGVNEIGDDIANTAHDVGDGFANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*
rlslikikkaqqrmaeqeerrrlmqeeserrrlqrnrerqepirtyttaqeaqryipkpg
nfarkrgarn*kkkk*k


Translated Amino Acid sequence (All Frames)
Frame A:
iiynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqviciplliifghvi
vsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdet
mlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGINLGFDPQYDTAYPDEN
GLGWDILASF---

---lsgf**sincyrcwycrwcyrcrrwcsssrcssrc*gwcrrscfqswwlyfsyc*sc
w*lyt*qsyslc*srlqfhekwctkswqrrt*lc**rlqfrerwctkswqrrt*lcstrl
ssmerrcq*dw**yrqyct*cr*wfrqyct*sr*wn*nhcrggi*th*rws*rnlgeeil
kviln*n*ksttkng*trrkkkvdarrk*kktiakkqrktran*nlynctrsstiytqtw
*lct*krckklkkekiki

Frame B:
lyti*fh*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashys*flgm**
ch*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*nc*sq*tkp
c***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmgltsvlihsmilliqmkm
vwdgislhlf---

---FQVSNDQLIAIDVGIAGGAIVAGAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRV
GNSIRSRATRYANQGYNSMRNGAQRAGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGY
QAWREGVNEIGDDIANTAHDVGDGFANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*
rlslikikkaqqrmaeqeerrrlmqeeserrrlqrnrerqepirtyttaqeaqryipkpg
nfarkrgarn*kkkk*k

Frame C:
yiqfnfinflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhptthnfwacns
vinqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdriadhsrrnh
vdndfivcymrfpalddygysnkvtpveqallhqfktqfnswd*prf*stv*yclsr*kw
fgmgypcifl---

---frflmin*ll*mlvlqvvlslqalvqqqpvqqpvlrvvpqellpelvviflvllvvl
vtlyvaellvmlikvtip*emvhkelatahvimlmkvtip*emvhkelatahvimlnkvi
khgekvsmrlvmispilhmm*vmvspilhvk*vmeleslqrrdmnslkmelkklg*rnik
gyp*lklkkhnkewlnkkkeeg*ckkkvkeddcketekdksqleliqlhkklndiypnlv
tlhvkevqeikkrknkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFK737 (SFK737Q) /CSM/SF/SFK7-B/SFK737Q.Seq.d/ 1142 0.0
SFK728 (SFK728Q) /CSM/SF/SFK7-B/SFK728Q.Seq.d/ 1142 0.0
SFH180 (SFH180Q) /CSM/SF/SFH1-D/SFH180Q.Seq.d/ 1142 0.0
SFG695 (SFG695Q) /CSM/SF/SFG6-D/SFG695Q.Seq.d/ 1142 0.0
SFF390 (SFF390Q) /CSM/SF/SFF3-D/SFF390Q.Seq.d/ 1142 0.0
SFF293 (SFF293Q) /CSM/SF/SFF2-D/SFF293Q.Seq.d/ 1142 0.0
SFD394 (SFD394Q) /CSM/SF/SFD3-D/SFD394Q.Seq.d/ 1142 0.0
SFB689 (SFB689Q) /CSM/SF/SFB6-D/SFB689Q.Seq.d/ 1142 0.0
CHD379 (CHD379Q) /CSM/CH/CHD3-D/CHD379Q.Seq.d/ 1142 0.0
CFI835 (CFI835Q) /CSM/CF/CFI8-B/CFI835Q.Seq.d/ 1142 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 170 4e-39 8
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 86 4e-26 11
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence. 40 0.003 13
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 0.006 11
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 34 0.009 12
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 32 0.011 9
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 36 0.015 12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 0.016 12
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 34 0.033 13
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence. 32 0.074 6
dna update 2004. 5. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso... 61 1e-07
AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo... 51 1e-04
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c... 49 5e-04
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16... 49 5e-04
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c... 49 5e-04
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup... 49 5e-04
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele... 47 0.001
AL844509_656(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 46 0.003
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo... 44 0.010
AB207257_1(AB207257|pid:none) Polypedilum vanderplanki PvLEA3 mR... 42 0.037
protein update 2009. 4.19
PSORT

psg: 0.73 gvh: 0.42 alm: 0.29 top: 0.67 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: cytoplasmic
24.0 %: mitochondrial
20.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for AFF144 is cyt

5' end seq. ID AFF144F
5' end seq.
>AFF144F.Seq
ATTATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATA
TTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTT
CATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATA
GTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATG
CAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTT
ATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACC
ATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTT
ACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCA
ACTCATGGGATTAACCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAAAAT
GGTTTGGGATGGGATATCCTTGCATCTTTTTA----------
Length of 5' end seq. 572
3' end seq. ID AFF144Z
3' end seq.
>AFF144Z.Seq
----------CTTTCAGGTTTCTAATGATCAATTAATTGCTATAGATGTTGGTATTGCAG
GTGGTGCTATCGTTGCAGGCGCTGGTGCAGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGG
GTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGTGGTTATATTTCTCGTACTGCTAGTCGTG
TTGGTAACTCTATACGTAGCAGAGCTACTCGTTATGCTAATCAAGGTTACAATTCCATGA
GAAATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCTAATGAAGGTTACAATT
CCGTGAGAGATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTT
ATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATATCGCCAATACTGCACATG
ATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTG
CAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATT
AAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAA
GAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGAC
AAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTCAACGATATATACCCAAACCTG
GTAACTTTGCACGTAAAAGAGGTGCAAGAAATTAAAAAAAGAAAAAATAAAAATA
Length of 3' end seq. 765
Connected seq. ID AFF144P
Connected seq.
>AFF144P.Seq
ATTATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATA
TTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTT
CATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATA
GTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATG
CAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTT
ATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACC
ATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTT
ACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCA
ACTCATGGGATTAACCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAAAAT
GGTTTGGGATGGGATATCCTTGCATCTTTTTA----------CTTTCAGGTTTCTAATGA
TCAATTAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCGCTGGTGC
AGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGC
TGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTAC
TCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGG
CGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGG
CAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGA
GATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGC
ACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGA
TGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAA
AGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGA
AAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGC
ACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCACGTAAAAGAGGTGCAAG
AAATTAAAAAAAGAAAAAATAAAAATA
Length of connected seq. 1337
Full length Seq ID -
Full length Seq. -
Length of full length seq. -