AFF143
Library AF
(Link to library)
Clone ID AFF143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFF143P
(Link to Original site)
Representative DNA sequence
>AFF143 (AFF143Q) /CSM/AF/AFF1-B/AFF143Q.Seq.d/
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAA
GAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTCACCA
GATAACACCTACAAAGTACTCGTCGATAACAAAGAGATXXXXXXXXXXAAAGAGATCCAA
GCAGGTACCCTCGCTGATGATTGGGAATTACTTCCATCAAAACAAATCAAAGATCCAAAA
CAATCCAAACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAA
CCAGTCGGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAG
GATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCACCAATCCAGAATAC
AAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACAC
CCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTC
GGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATC
GTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAA
GAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAA
GCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAA
GAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTC
AAAAAATCAACCAAAAAAGTNATCAGACGAACTTTAAATAAATAAATAAA
sequence update 2001. 6. 2
Translated Amino Acid sequence
nfsnhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVS
DWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVK
NEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKK
EINKVETDQLTHQYTLVISPDNTYKVLVDNKE---

---KEIQAGTLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPVGHDDIPASIVD
PEAVKPEDWNEEDDGEWEAPTITNPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNE
LYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVANQEAEKKMFDDLEAA
KAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDKKEEVKKSTKKVIRRTLN
K*i


Translated Amino Acid sequence (All Frames)
Frame A:
nfsnhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWESRWVVS
DWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVK
NEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKK
EINKVETDQLTHQYTLVISPDNTYKVLVDNKE---

---KEIQAGTLADDWELLPSKQIKDPKQSKPVDWVDVKEIDDPEDVKPVGHDDIPASIVD
PEAVKPEDWNEEDDGEWEAPTITNPEYKGEWKAKKIPNPEYKGEWVHPLIDNPEYAEDNE
LYLFNDLGAIGFELWQVKSGSIFNNMIVTDSVEEAKDFSEKTFVANQEAEKKMFDDLEAA
KAEERKKADEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTDDKKEEVKKSTKKVIRRTLN
K*i

Frame B:
ispiiifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitignqdgllv
igikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*r
mnkklivvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttkerti*srk
kstklkpin*lintlwsfhqitptkyssitkr---

---krskqvpslmignyfhqnkskiqnnpnqsiglt*rksmtqkmlnqsvmtisqlqsli
qklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqntkvngyth*litqntlktmn
stslmisvlsvsnygklnlvpslti*ssptlskklkislkrpllptkkpkrkclttskpp
klkrerkltkn*lpkkllkkkpkklmkkkkkslkki*lklmtkkkksknqpkkxsdel*i
nk*

Frame C:
flqssyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgikmgc**
la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke
*tks*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrkepfnqer
nqqs*nrsinssihfghftr*hlqstrr*qrd---

---rdpsrypr**lgitsiktnqrsktiqtsrlg*rkgnr*prrc*tsrs*rypsfnr*s
rscqtrgle*rrrr*mgspnhhqsriqr*meskenpksriqr*mgtpin**prir*rq*t
lpl**srcyrfrimas*iwfhl*qydrhrlcrrs*rfl*kdlccqprsrkenv*rprsrq
s*rekes*rkiscrksc*krsrrs**rrrrsr*rrfs*n**qkrrsqkinqksxqtnfk*
ink

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFF143 (AFF143Q) /CSM/AF/AFF1-B/AFF143Q.Seq.d/ 2062 0.0
VFG242 (VFG242Q) /CSM/VF/VFG2-B/VFG242Q.Seq.d/ 1047 0.0
AFN849 (AFN849Q) /CSM/AF/AFN8-C/AFN849Q.Seq.d/ 1047 0.0
AFI321 (AFI321Q) /CSM/AF/AFI3-A/AFI321Q.Seq.d/ 1047 0.0
AFE885 (AFE885Q) /CSM/AF/AFE8-D/AFE885Q.Seq.d/ 1047 0.0
AFD172 (AFD172Q) /CSM/AF/AFD1-C/AFD172Q.Seq.d/ 1047 0.0
VFL130 (VFL130Q) /CSM/VF/VFL1-B/VFL130Q.Seq.d/ 1039 0.0
VFI619 (VFI619Q) /CSM/VF/VFI6-A/VFI619Q.Seq.d/ 1039 0.0
VFH144 (VFH144Q) /CSM/VF/VFH1-B/VFH144Q.Seq.d/ 1039 0.0
VFE283 (VFE283Q) /CSM/VF/VFE2-D/VFE283Q.Seq.d/ 1039 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 1039 0.0 4
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 1e-27 4
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 2e-20 5
AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 1e-10 2
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 74 2e-10 2
CK247437|CK247437.1 EST731074 potato callus cDNA library, normalized and full-length Solanum tuberosum cDNA clone POCAT37 5' end, mRNA sequence. 66 5e-09 3
CK253744|CK253744.1 EST737381 potato callus cDNA library, normalized and full-length Solanum tuberosum cDNA clone POCC781 5' end, mRNA sequence. 66 5e-09 3
AW649196|AW649196.1 EST327650 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI7M10 5', mRNA sequence. 74 6e-09 1
AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence. 74 6e-09 1
BE459798|BE459798.1 EST415090 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM8G13, mRNA sequence. 74 6e-09 1
dna update 2004. 5. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 669 0.0
(Q9XF98) RecName: Full=Calreticulin; Flags: Precursor; &AF13473... 407 e-112
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 407 e-112
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 407 e-112
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 406 e-112
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 406 e-111
AF283816_1(AF283816|pid:none) Pinus taeda calreticulin mRNA, com... 405 e-111
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 405 e-111
AY836753_1(AY836753|pid:none) Triticum aestivum calreticulin-lik... 404 e-111
L27348_1(L27348|pid:none) Hordeum vulgare calreticulin (CRH1) mR... 402 e-110
protein update 2009. 4.19
PSORT

psg: 1.01 gvh: 0.69 alm: 0.47 top: 0.10 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: nuclear
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for AFF143 is exc

5' end seq. ID AFF143F
5' end seq.
>AFF143F.Seq
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAA
GAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTCACCA
GATAACACCTACAAAGTACTCGTCGATAACAAAGAGAT----------
Length of 5' end seq. 638
3' end seq. ID AFF143Z
3' end seq.
>AFF143Z.Seq
----------AAAGAGATCCAAGCAGGTACCCTCGCTGATGATTGGGAATTACTTCCATC
AAAACAAATCAAAGATCCAAAACAATCCAAACCAGTCGATTGGGTTGACGTAAAGGAAAT
CGATGACCCAGAAGATGTTAAACCAGTCGGTCATGACGATATCCCAGCTTCAATCGTTGA
TCCAGAAGCTGTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCC
AACCATCACCAATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGA
ATACAAAGGTGAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGA
ACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGG
TTCCATCTTTAACAATATGATCGTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGA
AAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGC
CAAAGCTGAAGAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAA
AGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAAC
TGATGACAAAAAAGAAGAAGTCAAAAAATCAACCAAAAAAGTNATCAGACGAACTTTAAA
TAAATAAATAAA
Length of 3' end seq. 722
Connected seq. ID AFF143P
Connected seq.
>AFF143P.Seq
AATTTCTCCAATCATCATATTTATAATTATATCTTTTTTGTTTAATAAAAAAGAAAGAAT
ACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTGTTTTCAATTTTGCATTA
TCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGT
GATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTT
GGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCA
GCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAG
AATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGAT
CAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGT
GCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGAACCATTTAATCAAGAAA
GAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACACTTTGGTCATTTCACCA
GATAACACCTACAAAGTACTCGTCGATAACAAAGAGAT----------AAAGAGATCCAA
GCAGGTACCCTCGCTGATGATTGGGAATTACTTCCATCAAAACAAATCAAAGATCCAAAA
CAATCCAAACCAGTCGATTGGGTTGACGTAAAGGAAATCGATGACCCAGAAGATGTTAAA
CCAGTCGGTCATGACGATATCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAG
GATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCACCAATCCAGAATAC
AAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACAC
CCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTC
GGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATC
GTCACCGACTCTGTCGAAGAAGCTAAAGATTTCTCTGAAAAGACCTTTGTTGCCAACCAA
GAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAAGAGAGAAAGAAA
GCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAA
GAAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGATGACAAAAAAGAAGAAGTC
AAAAAATCAACCAAAAAAGTNATCAGACGAACTTTAAATAAATAAATAAA
Length of connected seq. 1360
Full length Seq ID -
Full length Seq. -
Length of full length seq. -