AFF141
Library AF
(Link to library)
Clone ID AFF141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16294-1
Original site URL
Representative seq. ID AFF141P
(Link to Original site)
Representative DNA sequence
>AFF141 (AFF141Q) /CSM/AF/AFF1-B/AFF141Q.Seq.d/
TTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTA
ATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATC
AATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCAAT
TATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAA
TTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTA
AAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGATG
AAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGGTG
CAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACAAT
CAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAATCC
ATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTAGTTT
GCTTAXXXXXXXXXXTGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTT
AGATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATG
GTACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTG
GTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAA
TGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGC
AGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGA
AGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGA
ATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACAT
GGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATT
TATCGTTACTGGTTTATTAGGTCCAGGTTCAAATG
sequence update 2001. 6. 2
Translated Amino Acid sequence
DKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQL
LEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWDE
GLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESGSIH
LPQYVEKFQAEIQIPSLVVCL---

---EVDKRLHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYP
TICITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVT
FKMDKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIV
TGLLGPGSN


Translated Amino Acid sequence (All Frames)
Frame A:
likln*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqkkqfn
y*rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhslmhgm
kdyihtkqssritnsmvvvvqmmviqhllqslqskhcknnqfhmivm*lslkvpknlvqs
iyhnmlrssklkfkfhhw*fa---

---*sr*kitr*nsttsfrsnrkmc*nfrrnhl**ilmvqkyhssh*rfnpiddqqnlvs
nylhhrc*rysthfkcw*chenshhr*s*csfttiiqss*cincikrnfrn*stiwc*sy
lqng*mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyr
ywfirsrfk

Frame B:
**n*ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyrrsnsi
iremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*cmg*
ritsiqsshqe*qtlwswwcr*wlfnicfnlcnqsiartinst*slcnyh*rfrriwfnp
fttic*evps*nsnsiigsll---

---EVDKRLHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYP
TICITGAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVT
FKMDKCASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIV
TGLLGPGSN

Frame C:
DKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEAIQL
LEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDAWDE
GLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESGSIH
LPQYVEKFQAEIQIPSLVVCL---

---ksikdytlkfhniv*iksqnvlkf*akpsmmnshgtkiplqslki*pn**stklgiq
lfaspvlkvfhtlqmlvms*eltpplklvfvyhhhskqlmhqly*kkfsklihhmvlklp
skwinvlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs*kcymtvsivnlsl
lvy*vqvqm

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK163 (VFK163Q) /CSM/VF/VFK1-C/VFK163Q.Seq.d/ 1110 0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/ 1110 0.0
VFB402 (VFB402Q) /CSM/VF/VFB4-A/VFB402Q.Seq.d/ 1110 0.0
SFL182 (SFL182Q) /CSM/SF/SFL1-D/SFL182Q.Seq.d/ 1110 0.0
SFI811 (SFI811Q) /CSM/SF/SFI8-A/SFI811Q.Seq.d/ 1110 0.0
SFI553 (SFI553Q) /CSM/SF/SFI5-C/SFI553Q.Seq.d/ 1110 0.0
SFH222 (SFH222Q) /CSM/SF/SFH2-A/SFH222Q.Seq.d/ 1110 0.0
SFG389 (SFG389Q) /CSM/SF/SFG3-D/SFG389Q.Seq.d/ 1110 0.0
SFF785 (SFF785Q) /CSM/SF/SFF7-D/SFF785Q.Seq.d/ 1110 0.0
CFK209 (CFK209Q) /CSM/CF/CFK2-A/CFK209Q.Seq.d/ 1110 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 40 0.024 8
AL354810|AL354810.8 Human DNA sequence from clone RP11-527N12 on chromosome 13. 38 0.042 10
AC116446|AC116446.4 Mus musculus chromosome 9 clone RP24-142M20 map 9, WORKING DRAFT SEQUENCE, 5 ordered pieces. 36 0.14 8
BI435853|BI435853.1 EST538614 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCCL22 5' sequence, mRNA sequence. 48 0.30 1
BG591390|BG591390.1 EST499232 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI8D17 5' sequence, mRNA sequence. 48 0.30 1
BQ112173|BQ112173.1 EST597749 mixed potato tissues Solanum tuberosum cDNA clone STMCF59 3' end, mRNA sequence. 48 0.30 1
BI435340|BI435340.1 EST538101 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCCD08 5' sequence, mRNA sequence. 48 0.30 1
CK276169|CK276169.1 EST722247 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADR82 3' end, mRNA sequence. 48 0.30 1
CK266014|CK266014.1 EST712092 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAC219 3' end, mRNA sequence. 48 0.30 1
BI433279|BI433279.1 EST536040 P. infestans-challenged leaf Solanum tuberosum cDNA clone PPCBC62 5' sequence, mRNA sequence. 48 0.30 1
dna update 2004. 5. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ384330_1(DQ384330|pid:none) Hartmannella vermiformis succinyl-... 207 5e-52
DQ384331_1(DQ384331|pid:none) Physarum polycephalum succinyl-dia... 200 9e-50
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55... 187 8e-46
AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2... 187 8e-46
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 186 1e-45
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 179 2e-43
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi... 176 1e-42
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 176 1e-42
AM502249_240(AM502249|pid:none) Leishmania infantum chromosome 31. 176 1e-42
CT005268_204(CT005268|pid:none) Leishmania major strain Friedlin... 174 5e-42
protein update 2009. 4.19
PSORT

psg: 0.66 gvh: 0.29 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: vacuolar
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for AFF141 is nuc

5' end seq. ID AFF141F
5' end seq.
>AFF141F.Seq
TTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTA
ATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATC
AATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCAAT
TATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAA
TTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTA
AAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGATG
AAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGGTG
CAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACAAT
CAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAATCC
ATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTAGTTT
GCTTA----------
Length of 5' end seq. 605
3' end seq. ID AFF141Z
3' end seq.
>AFF141Z.Seq
----------TGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTTAGATC
AAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACA
AAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATC
CAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCA
TGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTG
ATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTA
CCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAG
AAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTG
AAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCG
TTACTGGTTTATTAGGTCCAGGTTCAAATG
Length of 3' end seq. 560
Connected seq. ID AFF141P
Connected seq.
>AFF141P.Seq
TTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAGAATTTAGTA
ATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAATTCCAAATC
AATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAGCAATTCAAT
TATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAATTAAAAGAA
TTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTGAAAAAGTTA
AAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATGCATGGGATG
AAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTCGTGGTGGTG
CAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGCAAGAACAAT
CAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTGGTTCAATCC
ATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAATTCAAATTCCATCATTGGTAGTTT
GCTTA----------TGAAGTCGATAAAAGATTACACGTTGAAATTCCACAACATCGTTT
AGATCAAATCGCAAAATGTGCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATG
GTACAAAAATACCACTCCAGTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTG
GTATCCAACTATTTGCATCACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAA
TGTCATGAGAACTCACACCACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGC
AGCTGATGCATCAACTGTATTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGA
AGTTACCTTCAAAATGGATAAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGA
ATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACAT
GGGTGAAGGTGGTTCCATCCCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATT
TATCGTTACTGGTTTATTAGGTCCAGGTTCAAATG
Length of connected seq. 1165
Full length Seq ID -
Full length Seq. -
Length of full length seq. -