CFJ467
Library CF
(Link to library)
Clone ID CFJ467
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFJ467 (CFJ467Q) /CSM/CF/CFJ4-C/CFJ467Q.Seq.d/
XXXXXXXXXXTATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTC
TTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTG
GTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATG
ACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTT
CATGGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCC
ATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTT
CCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTC
CAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTT
CAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAG
ATATTGTAGTTCAAAGA
sequence update 2001.11.22
Translated Amino Acid sequence
---IPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKND
IHKDLVFDVNYLGGNMPTFSWNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFIS
KQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPD
IVVQR


Translated Amino Acid sequence (All Frames)
Frame A:
---IPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKND
IHKDLVFDVNYLGGNMPTFSWNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFIS
KQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPD
IVVQR


Frame B:
---yqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelagsygevkmt
ftriwysmstilvaicqhfhgishvqvvk*yastitfcamvvvdipqfiklv*imvfsfp
sklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhpilyqtyqi
l*fk


Frame C:
---tnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlgrmer*k*h
sqgfgircqlswwqyanifmefltsrwsnsmpvl*lfapws*wiyrsssslsrswyfhfq
as*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancilystkltry
cssk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ467 (CFJ467Q) /CSM/CF/CFJ4-C/CFJ467Q.Seq.d/ 1084 0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/ 1076 0.0
SFL288 (SFL288Q) /CSM/SF/SFL2-D/SFL288Q.Seq.d/ 1076 0.0
SFK692 (SFK692Q) /CSM/SF/SFK6-D/SFK692Q.Seq.d/ 1076 0.0
SFK622 (SFK622Q) /CSM/SF/SFK6-A/SFK622Q.Seq.d/ 1076 0.0
SFH461 (SFH461Q) /CSM/SF/SFH4-C/SFH461Q.Seq.d/ 1076 0.0
SFH381 (SFH381Q) /CSM/SF/SFH3-D/SFH381Q.Seq.d/ 1076 0.0
SFH378 (SFH378Q) /CSM/SF/SFH3-D/SFH378Q.Seq.d/ 1076 0.0
SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/ 1076 0.0
SFG754 (SFG754Q) /CSM/SF/SFG7-C/SFG754Q.Seq.d/ 1076 0.0

own update 2002.11.19
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence. 66 8e-10 2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence. 68 2e-08 2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds. 58 2e-07 2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence. 64 3e-07 2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence. 64 3e-07 2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence. 64 4e-07 2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence. 64 4e-07 2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence. 64 4e-07 2
AW622257|AW622257.1 EST313055 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14P1 5', mRNA sequence. 66 5e-07 1
CB910900|CB910900.1 VVD157G07_379711 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVD157G07 5, mRNA sequence. 64 2e-06 1
dna update 2003.12. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 271 8e-72
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 268 7e-71
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 264 1e-69
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp... 264 1e-69
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345... 261 6e-69
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 253 2e-66
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n... 248 1e-64
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320... 247 2e-64
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul... 245 6e-64
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t... 242 5e-63
protein update 2009. 5.16
PSORT

psg: 0.75 gvh: 0.40 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for CFJ467 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ467Z
3' end seq.
>CFJ467Z.Seq
NNNNNNNNNNTATACCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTC
TTCAACCAGAAATTGTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTG
GTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATG
ACATTCACAAGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTT
CATGGAATTTCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCC
ATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTT
CCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTC
CAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTT
CAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAG
ATATTGTAGTTCAAAGA
Length of 3' end seq. 557
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -