CFJ439
Library CF
(Link to library)
Clone ID CFJ439
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFJ439P
(Link to Original site)
Representative DNA sequence
>CFJ439 (CFJ439Q) /CSM/CF/CFJ4-B/CFJ439Q.Seq.d/
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAXXXXXXXXXXA
GGTGTTTTAGTAGGTCCNCTCCACACCCAAAGCGCTGTTAAANAATTCNCTGAAGGTNTT
GAANAAATAAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANATCAG
TGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATNGTAAA
NACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATCTTGACGATGCTTT
TGCCTGGAATAATGAAGTCCCNCAAGGTNTCTCATNTTCCCTNTTCACAAACAATCAAAA
NAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTAAATGN
AGCTACNAACGGTGCTGAAATTGGTGGNGCCTTTGGAGGTGAAAAAAAGACCGGAGGTGG
TAAANAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAANACNATCAA
CTATGGTAATACTATGCCNTTATCNCAAGGNATCNATTTTAACTAAAATTACCNAAAAAA
AAAAACCAAATGTAACTTACATAACATAAATAAAAGAAT
sequence update 2001.11.22
Translated Amino Acid sequence
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMICGNV---

---GVLVGPLHTQSAVKXFXEGXEXIKKARW*grhww**trxqwwklc*tnrrch*t*cs
nxkx*txcsnxxhneiqks*rcfcle**spxrxlxfpxhkqskxylqmawtxri*lwxs*
rkxsyxrc*nwwxlwr*kkdrrw*xiwlrqletvlps*x*xxqlw*yyaxixrxxf*lkl
pkkknqm*lt*hk*kn


Translated Amino Acid sequence (All Frames)
Frame A:
tknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllq
llevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvk
ftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishv
pylvgmlqsq*favts---

---rcfsrsxphpkrc*xix*rx*xnkkskvvrsslvvinsxsvvetllnqpslplnmml
qx*xlnxlfqxxt**nskiltmllpgimksxkvshxpxsqtikxissngldxpdltvx*l
t*mxlxtvlklvxplevkkrpevvxnlaqtagnsiavvxlxxstmvilcxyxkxsiltki
txkkkpnvtyit*ike

Frame B:
qktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycn
c*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*n
lh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmc
rtwleccnlndlr*rp---

---GVLVGPLHTQSAVKXFXEGXEXIKKARW*grhww**trxqwwklc*tnrrch*t*cs
nxkx*txcsnxxhneiqks*rcfcle**spxrxlxfpxhkqskxylqmawtxri*lwxs*
rkxsyxrc*nwwxlwr*kkdrrw*xiwlrqletvlps*x*xxqlw*yyaxixrxxf*lkl
pkkknqm*lt*hk*kn

Frame C:
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMICGNV---

---vf**vxstpkallxnslkvlxk*kkqggkvviggnklxisggnfveptvvaiehdap
xvxtelfvpixyimkfknlddafawnnevpqgxsxslftnnqxnifkwlgptgsdcgivn
vnxatngaeiggafggekktgggkxsgsdswkqycrrxtxtinygntmplsqgixfn*ny
xkkktkcnlhninkr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ439 (CFJ439Q) /CSM/CF/CFJ4-B/CFJ439Q.Seq.d/ 1915 0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/ 1168 0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1168 0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/ 1168 0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/ 1168 0.0
SFJ264 (SFJ264Q) /CSM/SF/SFJ2-C/SFJ264Q.Seq.d/ 1168 0.0
SFI562 (SFI562Q) /CSM/SF/SFI5-C/SFI562Q.Seq.d/ 1168 0.0
SFH477 (SFH477Q) /CSM/SF/SFH4-D/SFH477Q.Seq.d/ 1168 0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/ 1168 0.0
SFF292 (SFF292Q) /CSM/SF/SFF2-D/SFF292Q.Seq.d/ 1168 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 789 0.0 10
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 7e-12 2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 2e-08 1
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 2e-07 3
BJ550374|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence. 44 1e-05 4
BF200236|BF200236.1 WHE2254_E08_J16ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE2254_E08_J16, mRNA sequence. 52 2e-05 3
CB209980|CB209980.1 OML00260 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence. 54 2e-05 2
BU111535|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence. 42 4e-05 3
CD733534|CD733534.1 4045967 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA clone 1GAL_17H10 5', mRNA sequence. 42 4e-05 3
BG711333| (S74728) antiquitin=26g turgor protein homolog [human, kidney, Peptide, 511 aa] [Homo sapiens]G, mRNA sequence. 42 4e-05 3
dna update 2003.12. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 375 e-102
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 233 1e-59
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 231 5e-59
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 229 2e-58
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 224 3e-57
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 223 1e-56
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 222 2e-56
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 221 3e-56
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 221 3e-56
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 221 5e-56
protein update 2009. 5.16
PSORT

psg: 0.78 gvh: 0.31 alm: 0.29 top: 0.53 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: mitochondrial
24.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CFJ439 is mit

5' end seq. ID CFJ439F
5' end seq.
>CFJ439F.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCANNNNNNNNNN
Length of 5' end seq. 599
3' end seq. ID CFJ439Z
3' end seq.
>CFJ439Z.Seq
NNNNNNNNNNAGGTGTTTTAGTAGGTCCNCTCCACACCCAAAGCGCTGTTAAANAATTCN
CTGAAGGTNTTGAANAAATAAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAA
CTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCT
CCAATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATCTT
GACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTCTCATNTTCCCTNTTCACA
AACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTT
AACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCTTTGGAGGTGAAAAAAAG
ACCGGAGGTGGTAAANAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACT
AANACNATCAACTATGGTAATACTATGCCNTTATCNCAAGGNATCNATTTTAACTAAAAT
TACCNAAAAAAAAAAACCAAATGTAACTTACATAACATAAATAAAAGAAT
Length of 3' end seq. 590
Connected seq. ID CFJ439P
Connected seq.
>CFJ439P.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCA----------A
GGTGTTTTAGTAGGTCCNCTCCACACCCAAAGCGCTGTTAAANAATTCNCTGAAGGTNTT
GAANAAATAAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGANATCAG
TGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATNGTAAA
NACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATCTTGACGATGCTTT
TGCCTGGAATAATGAAGTCCCNCAAGGTNTCTCATNTTCCCTNTTCACAAACAATCAAAA
NAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGTAAATGN
AGCTACNAACGGTGCTGAAATTGGTGGNGCCTTTGGAGGTGAAAAAAAGACCGGAGGTGG
TAAANAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAANACNATCAA
CTATGGTAATACTATGCCNTTATCNCAAGGNATCNATTTTAACTAAAATTACCNAAAAAA
AAAAACCAAATGTAACTTACATAACATAAATAAAAGAAT
Length of connected seq. 1169
Full length Seq ID -
Full length Seq. -
Length of full length seq. -