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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ391
Library CF
(Link to library)
Clone ID CFJ391
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CFJ391P
(Link to Original site)
Representative DNA sequence 
>CFJ391 (CFJ391Q) /CSM/CF/CFJ3-D/CFJ391Q.Seq.d/
ATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGG
TAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGA
ATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTXXXXXXXXXXATGAATG
TAAAGTTGCTCCCCAATNGTAAAGAATGNTGNGTCAGATCCCATAGACCACCACNGNCAN
AAGTTTGTTCATTAANATGNCCACCAAAACATGAATGTAAATTTNATGATCATGGTAAAA
AATGTTGTGTAAANATTCATTGTGATGNAGTANGTGATCTTAGACNTGTGGTAGAGGTTT
TGAATGTAAAATTANACATCATGGTTCAAAATGTTGTGTCCGTTCANAAAGGCCACANNN
ACCTCANCATGNNNAATGTAATAAGAGATGCCCACCAGNCCATGAATGTAAANTTGATCA
ACATGNAAAAGAATGCTGCGTTGTTGNCCATAGTCCGCCANCAAAATGCTCTTTAANATG
TCCANCAAGACATNAATGTAGAGTCAACCNCTTTGGTGAAGAATGTTGTGNTAAAGTTCN
CCNCGATAAATGTTCANTCANATGTCCACCAGGCNATGAATGTANAGTTGATCAACATGG
AAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCNCATTAAGATGTCCNNC
AAAACATGAATGTAGNA
sequence update 2001.11.22
Translated Amino Acid sequence 
fnfifnqfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEECH
KSSECIVINYTPCXGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCCPGESICEGLSSGSSTSG---

---MNVKLLPNXKEXXVRSHRPPXXXVCSLXXPPKHECKFXDHGKKCCVXIHCDXVXDLR
XVVEVLNVKLXIMVQNVVSVXKGHXXLXMXNVIRDAHQXMNVXLINMXKNAALLXIVRXQ
NAL*xvxqdxnvestxlvknvvxkfxxinvxsxvhqamnvxlinmeknvallpidhhqna
h*dvxqnmnvx
Translated Amino Acid sequence (All Frames) 
Frame A:
iqfyf*siqikkktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**rrms
*ifgmycyklytmlx*tkmgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*n
ynsnrvflf*cqd*rmclir*im*fpkellfksnfllpr*inl*rfklw*fniw---

---MNVKLLPNXKEXXVRSHRPPXXXVCSLXXPPKHECKFXDHGKKCCVXIHCDXVXDLR
XVVEVLNVKLXIMVQNVVSVXKGHXXLXMXNVIRDAHQXMNVXLINMXKNAALLXIVRXQ
NAL*xvxqdxnvestxlvknvvxkfxxinvxsxvhqamnvxlinmeknvallpidhhqna
h*dvxqnmnvx

Frame B:
fnfifnqfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEECH
KSSECIVINYTPCXGEQKWACSKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCCPGESICEGLSSGSSTSG---

---*m*scspxvknxxsdpidhhxxkfvh*xxhqnmnvnxmimvknvv*xfivmxxvild
xw*rf*m*nxtswfkmlcpfxkatxtsxxxm**emptxp*m*x*stxkrmlrcxp*saxk
mlfxmsxktxm*sqplw*rmlx*sspr*mfxxmstrx*mxs*stwkrmlrccp*tttkmx
ikmsxkt*m*

Frame C:
silflinsn*kknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmkknvi
nlrnvll*iihhvxvnknglalkvhlilvhmkivvieihpitkllkyqinasilmdllkl
qlqpsilvlmprlknvpy*vnhvvskrtlvqiqlpvaqvnqfvkv*alvvqhl---

---eckvapqx*rmxxqip*tttxxslfixmxtkt*m*ix*sw*kmlckxsl*xsx*s*t
cgrgfeckixhhgskccvrsxrpxxpxhxxcnkrcppxheckxdqhxkeccvvxhsppxk
cslxcpxrhxcrvnxfgeeccxkvxxdkcsxxcppgxecxvdqhgkeccvvahrpppkcx
lrcpxkhecx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ391 (CFJ391Q) /CSM/CF/CFJ3-D/CFJ391Q.Seq.d/                       1671   0.0
SLG501 (SLG501Q) /CSM/SL/SLG5-A/SLG501Q.Seq.d/                        841   0.0
SFL250 (SFL250Q) /CSM/SF/SFL2-C/SFL250Q.Seq.d/                        841   0.0
SFK426 (SFK426Q) /CSM/SF/SFK4-B/SFK426Q.Seq.d/                        841   0.0
SFK212 (SFK212Q) /CSM/SF/SFK2-A/SFK212Q.Seq.d/                        841   0.0
SFJ633 (SFJ633Q) /CSM/SF/SFJ6-B/SFJ633Q.Seq.d/                        841   0.0
SFJ257 (SFJ257Q) /CSM/SF/SFJ2-C/SFJ257Q.Seq.d/                        841   0.0
SFI696 (SFI696Q) /CSM/SF/SFI6-D/SFI696Q.Seq.d/                        841   0.0
SFI216 (SFI216Q) /CSM/SF/SFI2-A/SFI216Q.Seq.d/                        841   0.0
SFH201 (SFH201Q) /CSM/SF/SFH2-A/SFH201Q.Seq.d/                        841   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117267|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, *** SEQUENCING IN PROGRESS ***.   678   0.0    8
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.   678   0.0    7
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.   678   0.0    8
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    50   6e-05  10
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    50   6e-05  3
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    50   1e-04  3
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    50   0.003  5
AX348726|AX348726.1 Sequence 184 from Patent WO0202807.            32   0.20   5
AX344319|AX344319.1 Sequence 166 from Patent WO0200926.            32   0.20   5
AX251923|AX251923.1 Sequence 184 from Patent WO0168911.            32   0.20   5
dna update 2003.12. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   228   1e-70
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    95   2e-25
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName...   102   2e-20
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    78   5e-13
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    51   8e-05
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        46   0.002
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    43   0.022
AL591417_4(AL591417|pid:none) Mouse DNA sequence from clone RP23...    39   0.24
AK131904_1(AK131904|pid:none) Mus musculus adult male tongue cDN...    39   0.41
AB003753_1(AB003753|pid:none) Rattus norvegicus genes for high s...    37   0.91
protein update 2009. 5.16
PSORT 

 psg: 1.02  gvh: 0.68  alm: 0.37  top: 0.20  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for CFJ391 is exc
5' end seq. ID CFJ391F
5' end seq. 
>CFJ391F.Seq
ATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGG
TAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGA
ATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTNNNNNNNNNN
Length of 5' end seq. 533
3' end seq. ID CFJ391Z
3' end seq. 
>CFJ391Z.Seq
NNNNNNNNNNATGAATGTAAAGTTGCTCCCCAATNGTAAAGAATGNTGNGTCAGATCCCA
TAGACCACCACNGNCANAAGTTTGTTCATTAANATGNCCACCAAAACATGAATGTAAATT
TNATGATCATGGTAAAAAATGTTGTGTAAANATTCATTGTGATGNAGTANGTGATCTTAG
ACNTGTGGTAGAGGTTTTGAATGTAAAATTANACATCATGGTTCAAAATGTTGTGTCCGT
TCANAAAGGCCACANNNACCTCANCATGNNNAATGTAATAAGAGATGCCCACCAGNCCAT
GAATGTAAANTTGATCAACATGNAAAAGAATGCTGCGTTGTTGNCCATAGTCCGCCANCA
AAATGCTCTTTAANATGTCCANCAAGACATNAATGTAGAGTCAACCNCTTTGGTGAAGAA
TGTTGTGNTAAAGTTCNCCNCGATAAATGTTCANTCANATGTCCACCAGGCNATGAATGT
ANAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGC
NCATTAAGATGTCCNNCAAAACATGAATGTAGNA
Length of 3' end seq. 574
Connected seq. ID CFJ391P
Connected seq. 
>CFJ391P.Seq
ATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAA
AATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATT
CCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCA
TAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGTGAACAAAAATGGGC
TTGCTCTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCATC
CAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAAT
TACAACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGG
TAAATCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGA
ATCAATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGT----------ATGAATG
TAAAGTTGCTCCCCAATNGTAAAGAATGNTGNGTCAGATCCCATAGACCACCACNGNCAN
AAGTTTGTTCATTAANATGNCCACCAAAACATGAATGTAAATTTNATGATCATGGTAAAA
AATGTTGTGTAAANATTCATTGTGATGNAGTANGTGATCTTAGACNTGTGGTAGAGGTTT
TGAATGTAAAATTANACATCATGGTTCAAAATGTTGTGTCCGTTCANAAAGGCCACANNN
ACCTCANCATGNNNAATGTAATAAGAGATGCCCACCAGNCCATGAATGTAAANTTGATCA
ACATGNAAAAGAATGCTGCGTTGTTGNCCATAGTCCGCCANCAAAATGCTCTTTAANATG
TCCANCAAGACATNAATGTAGAGTCAACCNCTTTGGTGAAGAATGTTGTGNTAAAGTTCN
CCNCGATAAATGTTCANTCANATGTCCACCAGGCNATGAATGTANAGTTGATCAACATGG
AAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCNCATTAAGATGTCCNNC
AAAACATGAATGTAGNA
Length of connected seq. 1087
Full length Seq ID -
Full length Seq. -
Length of full length seq. -