CFJ388
Library CF
(Link to library)
Clone ID CFJ388
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFJ388 (CFJ388Q) /CSM/CF/CFJ3-D/CFJ388Q.Seq.d/
ATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAAACAATAACTAACTAAGTTAA
AAATAAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTTATGATAT
TCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTC
ATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGNGAACAAAAATGGG
CTTGCTNTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCAT
CCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAA
TTACAACTCCAACCGAGTACTNTTGTTCTGATGCCAAGATTAAAGAATGNGCCTTATTAG
GTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTG
AATCAATTTGTGAAGGTTTAAGCTNTGGTAGTTCAAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
silflinsn*kkkq*ltklkikk**RMLFXKNIGVFFMIFLVSKSYATDCNKITNEEECH
KSSECIVINYTPCXGEQKWACXKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYXCSDAKIKEXALLGKSCSFQXNSCSNPTSCCPGESICEGLSXGSS---


Translated Amino Acid sequence (All Frames)
Frame A:
iqfyf*siqikkknnn*ls*k*knnkgccx*kileyfl*yslyqnpmrrivikllmkknv
inlrnvll*iihhvxxnknglaxkvhlilvhmkivvieihpitkllkyqinasilmdllk
lqlqpstxvlmprlknxpy*vnhvvskxtlvqiqlpvaqvnqfvkv*axvv---


Frame B:
fnfifnqfklkkktitn*vknkkiikdvvxkkywsifydipcikilcdgl**ny**rrms
*ifgmycyklytmlxxtkmgll*ryi*ylyi*k*ll*kfiq*psc*sik*mlqs*wiy*n
ynsnrvllf*cqd*rmxlir*im*fpkxllfksnfllpr*inl*rfklw*f---


Frame C:
silflinsn*kkkq*ltklkikk**RMLFXKNIGVFFMIFLVSKSYATDCNKITNEEECH
KSSECIVINYTPCXGEQKWACXKGTFDTCTYENSCYRNSSNNQVVEVSNKCFNLDGFIKI
TTPTEYXCSDAKIKEXALLGKSCSFQXNSCSNPTSCCPGESICEGLSXGSS---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFJ388 (CFJ388Q) /CSM/CF/CFJ3-D/CFJ388Q.Seq.d/ 835 0.0
SLG501 (SLG501Q) /CSM/SL/SLG5-A/SLG501Q.Seq.d/ 827 0.0
SHJ685 (SHJ685Q) /CSM/SH/SHJ6-D/SHJ685Q.Seq.d/ 827 0.0
SFL250 (SFL250Q) /CSM/SF/SFL2-C/SFL250Q.Seq.d/ 827 0.0
SFK426 (SFK426Q) /CSM/SF/SFK4-B/SFK426Q.Seq.d/ 827 0.0
SFK212 (SFK212Q) /CSM/SF/SFK2-A/SFK212Q.Seq.d/ 827 0.0
SFJ633 (SFJ633Q) /CSM/SF/SFJ6-B/SFJ633Q.Seq.d/ 827 0.0
SFJ257 (SFJ257Q) /CSM/SF/SFJ2-C/SFJ257Q.Seq.d/ 827 0.0
SFI696 (SFI696Q) /CSM/SF/SFI6-D/SFI696Q.Seq.d/ 827 0.0
SFH201 (SFH201Q) /CSM/SF/SFH2-A/SFH201Q.Seq.d/ 827 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds. 640 0.0 4
AC117267|AC117267.1 Dictyostelium discoideum chromosome 2 map 4767688-4790343 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 640 0.0 5
AC115610|AC115610.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence. 640 0.0 5
AX348726|AX348726.1 Sequence 184 from Patent WO0202807. 32 0.008 5
AX344319|AX344319.1 Sequence 166 from Patent WO0200926. 32 0.008 5
AX251923|AX251923.1 Sequence 184 from Patent WO0168911. 32 0.008 5
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence. 30 0.016 10
AC135230|AC135230.8 Medicago truncatula clone mth2-23e14, complete sequence. 34 0.071 9
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 34 0.074 11
BX572090|BX572090.1 Prochlorococcus marinus MED4 complete genome; segment 1/5. 34 0.14 10
dna update 2003.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 228 5e-59
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 97 3e-19
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 42 0.007
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 39 0.076
(Q99088) RecName: Full=Low-density lipoprotein receptor 2; ... 35 1.1
QRXLL2(B40388)LDL receptor 2 precursor - African clawed frog 35 1.1
(Q99087) RecName: Full=Low-density lipoprotein receptor 1; ... 35 1.4
BC170345_1(BC170345|pid:none) Xenopus laevis low density lipopro... 35 1.4
QRXLL1(A40388)LDL receptor 1 precursor - African clawed frog 35 1.4
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat... 33 5.5
protein update 2009. 5.16
PSORT

psg: 1.02 gvh: 0.68 alm: 0.51 top: 0.20 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: extracellular, including cell wall
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: cytoplasmic
8.0 %: nuclear

>> prediction for CFJ388 is exc

5' end seq. ID CFJ388F
5' end seq.
>CFJ388F.Seq
ATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAAACAATAACTAACTAAGTTAA
AAATAAAAAAATAATAAAGGATGTTGTTTNTAAAAAATATTGGAGTATTTTTTATGATAT
TCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTC
ATAAATCTTCGGAATGTATTGTTATAAATTATACACCATGTTGNGGNGAACAAAAATGGG
CTTGCTNTAAAGGTACATTTGATACTTGTACATATGAAAATAGTTGTTATAGAAATTCAT
CCAATAACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAA
TTACAACTCCAACCGAGTACTNTTGTTCTGATGCCAAGATTAAAGAATGNGCCTTATTAG
GTAAATCATGTAGTTTCCAAAANAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTG
AATCAATTTGTGAAGGTTTAAGCTNTGGTAGTTCAANNNNNNNNNN
Length of 5' end seq. 526
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -