CFJ280
Library CF
(Link to library)
Clone ID CFJ280
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16460-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFJ280 (CFJ280Q) /CSM/CF/CFJ2-D/CFJ280Q.Seq.d/
ATTTATTATTATTTTTATTTTTTGTATATTAGCCAAATCATATAAAATTATATTTTTTAA
TTTTATTTGTAAATAATTAATTTGTATTTTTAAAAAAAAAAXXXXXXXXXX
sequence update 2001.11.22
Translated Amino Acid sequence
FIIIFIFCILAKSYKIIFFNFICK*licifkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
iyyyfyflyisqii*nyif*fyl*iinlyf*kk---


Frame B:
FIIIFIFCILAKSYKIIFFNFICK*licifkkk---


Frame C:
lllflffvy*pnhiklyflilfvnn*fvflkk---


Homology vs CSM-cDNA -
own update ----------
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] CFJ280: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] CFJ280: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2003.12. 1
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 105,306,159
protein update 2009. 5.16
PSORT

psg: 1.02 gvh: 0.49 alm: 0.25 top: 0.67 tms: 0.07 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.21 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CFJ280 is nuc

5' end seq. ID CFJ280F
5' end seq.
>CFJ280F.Seq
ATTTATTATTATTTTTATTTTTTGTATATTAGCCAAATCATATAAAATTATATTTTTTAA
TTTTATTTGTAAATAATTAATTTGTATTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 111
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -