CFJ265
Library CF
(Link to library)
Clone ID CFJ265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16517-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CFJ265 (CFJ265Q) /CSM/CF/CFJ2-C/CFJ265Q.Seq.d/
XXXXXXXXXXATAGATTAATTTCATTAGATAATTTAATGGAGGTATCAGAGGTACAACAA
GAATTAGCATGTAATCATGATCATAACAGTATTTATAATCATGTTTTAGAAATTGTAAAT
GATTCAAAATATACTGATAGAGATAAATTAGTATTAGTACTTTTATATAGTATTAGATAT
GAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTATCAAGTATTGGTATTCCTCCAAAA
GAAATTGGTTTAATTGATACATTAAGAGGATATGCAGGTGCAAGTTTAAGAGAAGGTGAT
TTATTAGGAACTAAAAATATTTTTTCATTTGCAAGAAGTGTTGTTAAACGTGGTTTACAA
GGTGTTTCAAATATTTATACTCAACATAAACCATTATTACATGATATTTTAGATAGTATT
TTAAAGAACAAATTAAAAGAAACCTCTTATCCATACTTATCAACAACTCAATCAAGAGAG
AGACCACAAGATGTAATTATATTTATGGTTGGTGGTATCACTTATGAAGAGGCATTAACC
GTTTACACTTTTAATTCTTTAAATACTGGTGTTTGTCGTGTTGTATTAGGTGGTACTTCA
ATTTTAAATCGTGAACAATTTTTAGAAGATTTATCAAGTACTCAAATTTCTAATCCTTCT
AGTAGTAG
sequence update 2001.11.22
Translated Amino Acid sequence
---RLISLDNLMEVSEVQQELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYE
DGRVWELKEKLSSIGIPPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQG
VSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTV
YTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQISNPSSS


Translated Amino Acid sequence (All Frames)
Frame A:
---*infir*fnggirgttrism*s*s*qyl*scfrnck*fkiy**r*isistfi*y*i*
rw*slgikrkiikywysskrnwfn*yikricrckfkrr*firn*kyffickkcc*twftr
cfkylyst*tiit*yfr*yfkeqikrnllsilinnsikrettrcnyiygwwyhl*rginr
lhf*ffkywclsccirwyfnfks*tifrrfikysnf*sf***


Frame B:
---RLISLDNLMEVSEVQQELACNHDHNSIYNHVLEIVNDSKYTDRDKLVLVLLYSIRYE
DGRVWELKEKLSSIGIPPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQG
VSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTV
YTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQISNPSSS


Frame C:
---d*fh*ii*wryqrynkn*hvimiitvfiimf*kl*miqniliein*y*yfyivldmk
mvefgn*kknyqvlvflqkklv*lih*edmqvqv*ekviy*elkiffhlqevllnvvykv
fqifilninhyymif*ivf*rtn*kkplihtyqqlnqerdhkm*lylwlvvslmkrh*pf
tllil*ilvfvvly*vvlqf*ivnnf*kiyqvlkflillvv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK543 (VFK543Q) /CSM/VF/VFK5-B/VFK543Q.Seq.d/ 1304 0.0
SFC628 (SFC628Q) /CSM/SF/SFC6-B/SFC628Q.Seq.d/ 1304 0.0
CHI228 (CHI228Q) /CSM/CH/CHI2-B/CHI228Q.Seq.d/ 1304 0.0
CFJ265 (CFJ265Q) /CSM/CF/CFJ2-C/CFJ265Q.Seq.d/ 1304 0.0
SFI855 (SFI855Q) /CSM/SF/SFI8-C/SFI855Q.Seq.d/ 1298 0.0
CFJ234 (CFJ234Q) /CSM/CF/CFJ2-B/CFJ234Q.Seq.d/ 1298 0.0
AFO808 (AFO808Q) /CSM/AF/AFO8-A/AFO808Q.Seq.d/ 1298 0.0
VHA223 (VHA223Q) /CSM/VH/VHA2-A/VHA223Q.Seq.d/ 1296 0.0
CHB225 (CHB225Q) /CSM/CH/CHB2-B/CHB225Q.Seq.d/ 1296 0.0
CFJ726 (CFJ726Q) /CSM/CF/CFJ7-B/CFJ726Q.Seq.d/ 1291 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP004174|AP004174.1 Mycoplasma penetrans genomic DNA, complete sequence, section 5/5. 36 1e-06 12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 4e-06 11
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 36 2e-05 23
AE015939|AE015939.1 Clostridium tetani E88, section 4 of 10 of the complete genome. 36 4e-05 16
AR271569|AR271569.1 Sequence 1 from patent US 6503729. 34 9e-05 25
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence. 36 2e-04 13
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5. 36 3e-04 13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 3e-04 24
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2. 36 5e-04 14
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 32 7e-04 19
dna update 2003.12. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GE3) RecName: Full=Vacuolar protein sorting-associated prote... 429 e-119
AK146190_1(AK146190|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 180 4e-44
AK295529_1(AK295529|pid:none) Homo sapiens cDNA FLJ54353 complet... 179 5e-44
AK223214_1(AK223214|pid:none) Homo sapiens mRNA for vacuolar pro... 179 5e-44
AJ133421_1(AJ133421|pid:none) Homo sapiens mRNA for leucocyte va... 179 5e-44
(Q9NRW7) RecName: Full=Vacuolar protein sorting-associated prote... 179 5e-44
BC123422_1(BC123422|pid:none) Bos taurus vacuolar protein sortin... 178 1e-43
BT045798_1(BT045798|pid:none) Salmo salar clone ssal-rgf-531-252... 173 4e-42
AJ720470_1(AJ720470|pid:none) Gallus gallus mRNA for hypothetica... 173 5e-42
BC084162_1(BC084162|pid:none) Xenopus laevis hypothetical LOC495... 173 5e-42
protein update 2009. 5.16
PSORT

psg: 0.75 gvh: 0.46 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for CFJ265 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFJ265Z
3' end seq.
>CFJ265Z.Seq
NNNNNNNNNNATAGATTAATTTCATTAGATAATTTAATGGAGGTATCAGAGGTACAACAA
GAATTAGCATGTAATCATGATCATAACAGTATTTATAATCATGTTTTAGAAATTGTAAAT
GATTCAAAATATACTGATAGAGATAAATTAGTATTAGTACTTTTATATAGTATTAGATAT
GAAGATGGTAGAGTTTGGGAATTAAAAGAAAAATTATCAAGTATTGGTATTCCTCCAAAA
GAAATTGGTTTAATTGATACATTAAGAGGATATGCAGGTGCAAGTTTAAGAGAAGGTGAT
TTATTAGGAACTAAAAATATTTTTTCATTTGCAAGAAGTGTTGTTAAACGTGGTTTACAA
GGTGTTTCAAATATTTATACTCAACATAAACCATTATTACATGATATTTTAGATAGTATT
TTAAAGAACAAATTAAAAGAAACCTCTTATCCATACTTATCAACAACTCAATCAAGAGAG
AGACCACAAGATGTAATTATATTTATGGTTGGTGGTATCACTTATGAAGAGGCATTAACC
GTTTACACTTTTAATTCTTTAAATACTGGTGTTTGTCGTGTTGTATTAGGTGGTACTTCA
ATTTTAAATCGTGAACAATTTTTAGAAGATTTATCAAGTACTCAAATTTCTAATCCTTCT
AGTAGTAG
Length of 3' end seq. 668
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -