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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFJ235
Library CF
(Link to library)
Clone ID CFJ235
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07719-1
Original site URL
Representative seq. ID CFJ235P
(Link to Original site)
Representative DNA sequence 
>CFJ235 (CFJ235Q) /CSM/CF/CFJ2-B/CFJ235Q.Seq.d/
ATATCAGTTTTACATCTTTTTTAAATATATATCTACTATATCTAATATCCAATTATTTAT
CTATAATAATTTTTTTAATTAAAAAAGAAATCATTAATTTGTTTTAATATAAAAAAAAAA
XXXXXXXXXXCCAACTCCACATCATTCACTCATTAATGGTTATAAAGAAATGGAAAATGG
TGATCTCAATGAACTTTATTCAATTGATTGGAGAAAGAAAGGTTTAGTAACTCCAGGTTA
AAGATCAAGGTCAATGTGGTAGTTGTTACATTTTCTCTGCTGTTGAACAAATTGAAACTG
CTTGGATTAAAGCTGGTAATAAACCAATTTTATTATCAGAACAACAAGCAGTTGATTGTG
ATCCATATGATGGCCAATGTGGTGGTGGTGATCCATATACAGTTTATGAATATTTTAGTC
AAGTTGGTGGTGTTAGTACTAATGCTCAATATCCATATACTGCTACAGATGGTACATGTG
TTAATATGAGTAGAGCTGTACCAGTGGTTTCATATCATTATGTTACTCAAGGTGGTGATG
AAAATACTTTAATTAAAACCATCGTCAATGATGGTCCAGTAAGTATTTGTGTTGATGCTT
CAACATGGCAATCCTATTCTGGTGGTATTATTACAACTGGTTGTGGTAAAAACATTGATC
ATTGTGTTCAAGTA
sequence update 2001.11.22
Translated Amino Acid sequence 
isvlhlf*iyiyyi*ypiiyl**ff*LKKKSLICFNIKKK---

---PTPHHSLINGYKEMENGDLNELYSIDWRKKGLVTPG*rsrsmw*llhflcc*tn*nc
ld*sw**tnfiirttss*l*si*wpmwww*siysl*if*sswwc*y*csisiycyrwymc
*ye*sctsgfislcysrw**kyfn*nhrq*wsskylc*cfnmailfwwyyynwlw*kh*s
lcss
Translated Amino Acid sequence (All Frames) 
Frame A:
isvlhlf*iyiyyi*ypiiyl**ff*LKKKSLICFNIKKK---

---PTPHHSLINGYKEMENGDLNELYSIDWRKKGLVTPG*rsrsmw*llhflcc*tn*nc
ld*sw**tnfiirttss*l*si*wpmwww*siysl*if*sswwc*y*csisiycyrwymc
*ye*sctsgfislcysrw**kyfn*nhrq*wsskylc*cfnmailfwwyyynwlw*kh*s
lcss

Frame B:
yqfyiffkyistisniqlfiynnffn*krnh*fvli*kk---

---qlhiihslmvikkwkmvismnfiqligerkv**lqvkdqgqcgscyifsaveqieta
wikagnkpillseqqavdcdpydgqcgggdpytvyeyfsqvggvstnaqypytatdgtcv
nmsravpvvsyhyvtqggdentliktivndgpvsicvdastwqsysggiittgcgknidh
cvqv

Frame C:
isftsflniyllylisnylsiiiflikkeiinlf*ykkk---

---nstsfth*wl*rngkw*sq*tlfn*lekerfsnsrlkikvnvvvvtfslllnklkll
glklvinqfyyqnnkqlivihmmanvvvvihiqfmnilvklvvlvlmlnihillqmvhvl
i*velyqwfhiimllkvvmkil*lkpssmmvq*vfvlmlqhgnpilvvllqlvvvktlii
vfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFJ235 (CFJ235Q) /CSM/CF/CFJ2-B/CFJ235Q.Seq.d/                       1078   0.0
AFI279 (AFI279Q) /CSM/AF/AFI2-D/AFI279Q.Seq.d/                        969   0.0
SSI455 (SSI455Q) /CSM/SS/SSI4-C/SSI455Q.Seq.d/                        924   0.0
SSJ874 (SSJ874Q) /CSM/SS/SSJ8-D/SSJ874Q.Seq.d/                        819   0.0
SSL745 (SSL745Q) /CSM/SS/SSL7-B/SSL745Q.Seq.d/                        813   0.0
SSE774 (SSE774Q) /CSM/SS/SSE7-D/SSE774Q.Seq.d/                        775   0.0
SSD408 (SSD408Q) /CSM/SS/SSD4-A/SSD408Q.Seq.d/                        767   0.0
SSK693 (SSK693Q) /CSM/SS/SSK6-D/SSK693Q.Seq.d/                        747   0.0
SSE146 (SSE146Q) /CSM/SS/SSE1-B/SSE146Q.Seq.d/                        704   0.0
SSE224 (SSE224Q) /CSM/SS/SSE2-A/SSE224Q.Seq.d/                        680   0.0
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   759   0.0    10
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.    60   1e-09  3
AJ004958|AJ004958.1 Pisum sativum mRNA for TPE4A thiol-protease.    48   5e-08  2
CD860351|CD860351.1 TE.002D02F011204 TE Pisum sativum cDNA clone TE002D02, mRNA sequence.    48   5e-08  2
CD859313|CD859313.1 F15.001A09F020226 F15 Pisum sativum cDNA clone F15001A09, mRNA sequence.    48   5e-08  2
U19267|U19267.1 Zinnia elegans cysteine proteinase mRNA, complete cds.    48   2e-07  2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.    52   7e-07  2
BQ164913|BQ164913.1 EST610782 KVKC Medicago truncatula cDNA clone pKVKC-3E10, mRNA sequence.    44   7e-07  2
BM780006|BM780006.1 EST590582 KV2 Medicago truncatula cDNA clone pKV2-53N19, mRNA sequence.    44   7e-07  2
BG452841|BG452841.1 NF081C10LF1F1071 Developing leaf Medicago truncatula cDNA clone NF081C10LF 5', mRNA sequence.    44   7e-07  2
dna update 2003.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_19(AC116956|pid:none) Dictyostelium discoideum chromoso...   312   e-101
BT052642_1(BT052642|pid:none) Medicago truncatula clone MTYFD_FE...   122   1e-28
(O65039) RecName: Full=Vignain;          EC=3.4.22.-; AltName: F...   118   8e-27
FB844632_1(FB844632|pid:none) Sequence 63905 from Patent WO20080...   113   9e-26
CT005247_102(CT005247|pid:none) Leishmania major strain Friedlin...   115   9e-26
AB092557_1(AB092557|pid:none) Glycine max CysP2 mRNA for cystein...   112   2e-25
AF149848_1(AF149848|pid:none) Acanthamoeba royreba cysteine prot...   117   4e-25
(P12412) RecName: Full=Vignain;          EC=3.4.22.-; AltName: F...   112   4e-25
U49445_1(U49445|pid:none) Vigna radiata cysteinyl endopeptidase ...   111   5e-25
CT005247_107(CT005247|pid:none) Leishmania major strain Friedlin...   112   7e-25
protein update 2009. 5.16
PSORT 

 psg: 0.77  gvh: 0.10  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for CFJ235 is nuc
5' end seq. ID CFJ235F
5' end seq. 
>CFJ235F.Seq
ATATCAGTTTTACATCTTTTTTAAATATATATCTACTATATCTAATATCCAATTATTTAT
CTATAATAATTTTTTTAATTAAAAAAGAAATCATTAATTTGTTTTAATATAAAAAAAAAA
NNNNNNNNNN
Length of 5' end seq. 130
3' end seq. ID CFJ235Z
3' end seq. 
>CFJ235Z.Seq
NNNNNNNNNNCCAACTCCACATCATTCACTCATTAATGGTTATAAAGAAATGGAAAATGG
TGATCTCAATGAACTTTATTCAATTGATTGGAGAAAGAAAGGTTTAGTAACTCCAGGTTA
AAGATCAAGGTCAATGTGGTAGTTGTTACATTTTCTCTGCTGTTGAACAAATTGAAACTG
CTTGGATTAAAGCTGGTAATAAACCAATTTTATTATCAGAACAACAAGCAGTTGATTGTG
ATCCATATGATGGCCAATGTGGTGGTGGTGATCCATATACAGTTTATGAATATTTTAGTC
AAGTTGGTGGTGTTAGTACTAATGCTCAATATCCATATACTGCTACAGATGGTACATGTG
TTAATATGAGTAGAGCTGTACCAGTGGTTTCATATCATTATGTTACTCAAGGTGGTGATG
AAAATACTTTAATTAAAACCATCGTCAATGATGGTCCAGTAAGTATTTGTGTTGATGCTT
CAACATGGCAATCCTATTCTGGTGGTATTATTACAACTGGTTGTGGTAAAAACATTGATC
ATTGTGTTCAAGTA
Length of 3' end seq. 554
Connected seq. ID CFJ235P
Connected seq. 
>CFJ235P.Seq
ATATCAGTTTTACATCTTTTTTAAATATATATCTACTATATCTAATATCCAATTATTTAT
CTATAATAATTTTTTTAATTAAAAAAGAAATCATTAATTTGTTTTAATATAAAAAAAAAA
----------CCAACTCCACATCATTCACTCATTAATGGTTATAAAGAAATGGAAAATGG
TGATCTCAATGAACTTTATTCAATTGATTGGAGAAAGAAAGGTTTAGTAACTCCAGGTTA
AAGATCAAGGTCAATGTGGTAGTTGTTACATTTTCTCTGCTGTTGAACAAATTGAAACTG
CTTGGATTAAAGCTGGTAATAAACCAATTTTATTATCAGAACAACAAGCAGTTGATTGTG
ATCCATATGATGGCCAATGTGGTGGTGGTGATCCATATACAGTTTATGAATATTTTAGTC
AAGTTGGTGGTGTTAGTACTAATGCTCAATATCCATATACTGCTACAGATGGTACATGTG
TTAATATGAGTAGAGCTGTACCAGTGGTTTCATATCATTATGTTACTCAAGGTGGTGATG
AAAATACTTTAATTAAAACCATCGTCAATGATGGTCCAGTAAGTATTTGTGTTGATGCTT
CAACATGGCAATCCTATTCTGGTGGTATTATTACAACTGGTTGTGGTAAAAACATTGATC
ATTGTGTTCAAGTA
Length of connected seq. 664
Full length Seq ID -
Full length Seq. -
Length of full length seq. -